SRR18996195 · Gut microbiome
gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Enterobacter hormaechei | Enterobacter | 23.4518 |
| Enterococcus faecium | Enterococcus | 17.4963 |
| Lactococcus lactis | Lactococcus | 10.9846 |
| Enterobacter roggenkampii | Enterobacter | 9.0355 |
| Enterobacter asburiae | Enterobacter | 4.6467 |
| Enterobacter cloacae | Enterobacter | 4.4321 |
| Enterococcus columbae | Enterococcus | 3.9422 |
| Enterococcus wangshanyuanii | Enterococcus | 3.3827 |
| Enterobacter ludwigii | Enterobacter | 3.3494 |
| Enterococcus gallinarum | Enterococcus | 3.0284 |
| Enterobacter kobei | Enterobacter | 2.8396 |
| Enterococcus faecalis | Enterococcus | 2.7863 |
| Enterobacter cancerogenus | Enterobacter | 2.7514 |
| Enterococcus avium | Enterococcus | 1.3127 |
| Enterobacter bugandensis | Enterobacter | 1.0495 |
| Enterococcus casseliflavus | Enterococcus | 0.9374 |
| Enterococcus moraviensis | Enterococcus | 0.6200 |
| Lactococcus taiwanensis | Lactococcus | 0.5434 |
| Enterococcus haemoperoxidus | Enterococcus | 0.4998 |
| Enterococcus hirae | Enterococcus | 0.4539 |
| Enterococcus saccharolyticus | Enterococcus | 0.3573 |
| Enterococcus quebecensis | Enterococcus | 0.3528 |
| Lactococcus garvieae | Lactococcus | 0.3520 |
| Enterobacter mori | Enterobacter | 0.3258 |
| Lactiplantibacillus plantarum | Lactiplantibacillus | 0.3258 |
| Lacticaseibacillus paracasei | Lacticaseibacillus | 0.2444 |
| Enterococcus canis | Enterococcus | 0.2381 |
| Enterococcus ureasiticus | Enterococcus | 0.1788 |
| Lacticaseibacillus sharpeae | Lacticaseibacillus | 0.0815 |
Saved public metadata
{
"run_accession": "SRR18996195",
"study_accession": "PRJNA827637",
"sample_accession": "SAMN27615857",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "132220",
"base_count": "193048220",
"fastq_bytes": "175532798",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR189/095/SRR18996195/SRR18996195_1.fastq.gz",
"sample_title": "gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "935d3ce559969ad59fcee6e42f1a3e33e4149ce995af4db0d6a0a446b2ee8ed5",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7718,
"elapsed_seconds": 2.0590404809999967,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 24,
"fraction": 0.12,
"adapters_found": {
"BC_FLANK": 19,
"27F": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}