SRR15676149 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Helicobacter apodemus | Helicobacter | 21.4972 |
| Bacillus thuringiensis | Bacillus | 11.2940 |
| Helicobacter pylori | Helicobacter | 6.3701 |
| Helicobacter canicola | Helicobacter | 5.7682 |
| Helicobacter fennelliae | Helicobacter | 5.2191 |
| Helicobacter apri | Helicobacter | 4.7393 |
| Ligilactobacillus murinus | Ligilactobacillus | 4.4436 |
| Bacillus cereus | Bacillus | 4.4302 |
| Ligilactobacillus salivarius | Ligilactobacillus | 4.4073 |
| Helicobacter typhlonius | Helicobacter | 4.1853 |
| Helicobacter mastomyrinus | Helicobacter | 4.0690 |
| Bacillus anthracis | Bacillus | 2.1564 |
| Clostridium beijerinckii | Clostridium | 1.7369 |
| Clostridium estertheticum | Clostridium | 1.7221 |
| Helicobacter macacae | Helicobacter | 1.2644 |
| Helicobacter acinonychis | Helicobacter | 1.2490 |
| Bacillus velezensis | Bacillus | 1.0609 |
| Clostridium septicum | Clostridium | 0.9249 |
| Helicobacter hepaticus | Helicobacter | 0.9142 |
| Ligilactobacillus saerimneri | Ligilactobacillus | 0.8759 |
| Clostridium botulinum | Clostridium | 0.8754 |
| Bacillus subtilis | Bacillus | 0.8452 |
| Clostridium isatidis | Clostridium | 0.7840 |
| Ligilactobacillus animalis | Ligilactobacillus | 0.7647 |
| Clostridium thermosuccinogenes | Clostridium | 0.7607 |
| Helicobacter pullorum | Helicobacter | 0.6576 |
| Bacillus amyloliquefaciens | Bacillus | 0.6223 |
| Bacillus licheniformis | Bacillus | 0.6130 |
| Helicobacter bilis | Helicobacter | 0.5907 |
| Clostridium sporogenes | Clostridium | 0.5847 |
| Clostridium carnis | Clostridium | 0.5744 |
| Ligilactobacillus acidipiscis | Ligilactobacillus | 0.5199 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.4864 |
| Clostridium baratii | Clostridium | 0.4650 |
| Bacillus coagulans | Bacillus | 0.4030 |
| Clostridium phytofermentans | Clostridium | 0.3903 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.3728 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.3481 |
| Helicobacter cetorum | Helicobacter | 0.3464 |
| Helicobacter cholecystus | Helicobacter | 0.3411 |
| Bacillus pumilus | Bacillus | 0.3262 |
Saved public metadata
{
"run_accession": "SRR15676149",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156598",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "226738",
"base_count": "371461986",
"fastq_bytes": "390506151",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/049/SRR15676149/SRR15676149_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "744a5795c0529a14beb315ae8e15034a126043636e8a4954141935a682ad8708",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1582.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13509,
"elapsed_seconds": 1.7058862379999482,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}