SRR15676148 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus psittaci | Lactobacillus | 20.1033 |
| Lactobacillus johnsonii | Lactobacillus | 14.3703 |
| Ligilactobacillus murinus | Ligilactobacillus | 10.4317 |
| Limosilactobacillus reuteri | Limosilactobacillus | 8.7321 |
| Ligilactobacillus salivarius | Ligilactobacillus | 8.2577 |
| Lactobacillus delbrueckii | Lactobacillus | 4.7465 |
| Helicobacter pylori | Helicobacter | 3.4790 |
| Helicobacter canicola | Helicobacter | 3.3339 |
| Helicobacter fennelliae | Helicobacter | 2.3124 |
| Lactobacillus gasseri | Lactobacillus | 2.2232 |
| Helicobacter hepaticus | Helicobacter | 2.1011 |
| Helicobacter apri | Helicobacter | 1.9230 |
| Ligilactobacillus saerimneri | Ligilactobacillus | 1.8833 |
| Helicobacter apodemus | Helicobacter | 1.7077 |
| Helicobacter typhlonius | Helicobacter | 1.5923 |
| Helicobacter cholecystus | Helicobacter | 1.5331 |
| Helicobacter bilis | Helicobacter | 1.4916 |
| Limosilactobacillus oris | Limosilactobacillus | 1.4564 |
| Lactobacillus helveticus | Lactobacillus | 1.3336 |
| Lactobacillus jensenii | Lactobacillus | 0.9762 |
| Ligilactobacillus acidipiscis | Ligilactobacillus | 0.9513 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.8753 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.8705 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.6921 |
| Ligilactobacillus animalis | Ligilactobacillus | 0.6735 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.5971 |
| Helicobacter aurati | Helicobacter | 0.4714 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.4533 |
| Helicobacter acinonychis | Helicobacter | 0.4271 |
Saved public metadata
{
"run_accession": "SRR15676148",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156599",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "159857",
"base_count": "263039300",
"fastq_bytes": "275516275",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/048/SRR15676148/SRR15676148_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "db6bc38302ebd0d8458be41e06703c573e121c70c4ffdc6e20ee755a726351d5",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1592.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14134,
"elapsed_seconds": 1.6794215219999842,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 6,
"fraction": 0.03,
"adapters_found": {
"BC_FLANK": 3,
"27F": 3
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}