SRR15676141 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 18.7629 |
| Lactobacillus johnsonii | Lactobacillus | 13.6567 |
| Ligilactobacillus murinus | Ligilactobacillus | 12.4108 |
| Ligilactobacillus aviarius | Ligilactobacillus | 9.0913 |
| Limosilactobacillus reuteri | Limosilactobacillus | 8.6505 |
| Ligilactobacillus agilis | Ligilactobacillus | 7.7946 |
| Lactobacillus delbrueckii | Lactobacillus | 4.4358 |
| Helicobacter acinonychis | Helicobacter | 3.8350 |
| Helicobacter apodemus | Helicobacter | 3.7855 |
| Lactobacillus psittaci | Lactobacillus | 2.9877 |
| Lactobacillus acetotolerans | Lactobacillus | 2.8695 |
| Ligilactobacillus apodemi | Ligilactobacillus | 1.7490 |
| Ligilactobacillus animalis | Ligilactobacillus | 1.3875 |
| Parabacteroides distasonis | Parabacteroides | 1.2468 |
| Ligilactobacillus salivarius | Ligilactobacillus | 0.9965 |
| Parabacteroides faecis | Parabacteroides | 0.8695 |
| Helicobacter mesocricetorum | Helicobacter | 0.5839 |
| Helicobacter bilis | Helicobacter | 0.5697 |
| Helicobacter macacae | Helicobacter | 0.5336 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.5190 |
| Parabacteroides merdae | Parabacteroides | 0.4428 |
| Helicobacter apri | Helicobacter | 0.4099 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.3939 |
| Lactobacillus hominis | Lactobacillus | 0.3576 |
| Helicobacter pullorum | Helicobacter | 0.3287 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.3136 |
| Lactobacillus helveticus | Lactobacillus | 0.2746 |
| Limosilactobacillus oris | Limosilactobacillus | 0.2602 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 0.2465 |
| Parabacteroides gordonii | Parabacteroides | 0.2367 |
Saved public metadata
{
"run_accession": "SRR15676141",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156588",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "209483",
"base_count": "251948012",
"fastq_bytes": "254109956",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/041/SRR15676141/SRR15676141_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "54ddbde07bcd61fae878a9971ae7b2634f58404bf9736134b05ff930753e6269",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1430.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 9800,
"elapsed_seconds": 1.4392026920000092,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}