SRR15676138 · Gut microbiome
Metagenome of Peromyscus leucopus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus reuteri | Limosilactobacillus | 17.4542 |
| Lactobacillus acetotolerans | Lactobacillus | 9.8527 |
| Lactobacillus helveticus | Lactobacillus | 8.9596 |
| Lactobacillus delbrueckii | Lactobacillus | 8.6373 |
| Lactobacillus intestinalis | Lactobacillus | 7.4745 |
| Ligilactobacillus murinus | Ligilactobacillus | 6.0191 |
| Lactobacillus psittaci | Lactobacillus | 5.6335 |
| Ligilactobacillus animalis | Ligilactobacillus | 5.3087 |
| Muribaculum intestinale | Muribaculum | 5.0000 |
| Lactobacillus amylolyticus | Lactobacillus | 4.8992 |
| Ligilactobacillus aviarius | Ligilactobacillus | 4.5056 |
| Ligilactobacillus agilis | Ligilactobacillus | 4.3327 |
| Lactobacillus johnsonii | Lactobacillus | 1.9891 |
| Lactobacillus jensenii | Lactobacillus | 1.6283 |
| Ligilactobacillus apodemi | Ligilactobacillus | 1.4731 |
| Lactobacillus amylovorus | Lactobacillus | 1.4330 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.0032 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.9324 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.9284 |
| Lactobacillus gallinarum | Lactobacillus | 0.9232 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.5544 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.5418 |
| Lactobacillus kalixensis | Lactobacillus | 0.5158 |
Saved public metadata
{
"run_accession": "SRR15676138",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156608",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "313147",
"base_count": "357783476",
"fastq_bytes": "325986820",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/038/SRR15676138/SRR15676138_1.fastq.gz",
"sample_title": "Metagenome of Peromyscus leucopus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a9a7d3b72882c8b4d41f56fc7d1473a97010fe87cd6255cfe2de39498255247d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1430.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14399,
"elapsed_seconds": 1.29878819999999,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}