SRR15676132 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 16.5609 |
| Lactobacillus johnsonii | Lactobacillus | 11.5475 |
| Limosilactobacillus reuteri | Limosilactobacillus | 7.9457 |
| Phocaeicola sartorii | Phocaeicola | 6.9966 |
| Ligilactobacillus aviarius | Ligilactobacillus | 6.5116 |
| Ligilactobacillus agilis | Ligilactobacillus | 5.3893 |
| Bacteroides ovatus | Bacteroides | 5.0717 |
| Blautia producta | Blautia | 5.0323 |
| Helicobacter ganmani | Helicobacter | 3.2430 |
| Blautia hansenii | Blautia | 2.3134 |
| Bacteroides zoogleoformans | Bacteroides | 2.2446 |
| Helicobacter acinonychis | Helicobacter | 2.1396 |
| Bacteroides cellulosilyticus | Bacteroides | 2.1287 |
| Lactobacillus psittaci | Lactobacillus | 2.1172 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.8220 |
| Lactobacillus delbrueckii | Lactobacillus | 1.7432 |
| Lactobacillus acetotolerans | Lactobacillus | 1.6182 |
| Helicobacter pylori | Helicobacter | 1.4484 |
| Bacteroides fragilis | Bacteroides | 1.4403 |
| Ligilactobacillus apodemi | Ligilactobacillus | 1.4271 |
| Helicobacter apodemus | Helicobacter | 1.2542 |
| Helicobacter rodentium | Helicobacter | 1.2227 |
| Ligilactobacillus animalis | Ligilactobacillus | 1.2214 |
| Helicobacter pullorum | Helicobacter | 1.0311 |
| Bacteroides xylanisolvens | Bacteroides | 0.9777 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.8878 |
| Helicobacter macacae | Helicobacter | 0.8034 |
| Helicobacter hepaticus | Helicobacter | 0.6497 |
| Bacteroides fluxus | Bacteroides | 0.5907 |
| Phocaeicola dorei | Phocaeicola | 0.5706 |
| Blautia marasmi | Blautia | 0.5187 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.4487 |
| Phocaeicola vulgatus | Phocaeicola | 0.3983 |
| Helicobacter bilis | Helicobacter | 0.3706 |
| Lactobacillus hominis | Lactobacillus | 0.3131 |
Saved public metadata
{
"run_accession": "SRR15676132",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156614",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "256200",
"base_count": "212769953",
"fastq_bytes": "192790688",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/032/SRR15676132/SRR15676132_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "544a8f25fcd62b372fed8099b09ec95646a07d092e07b47b30ec8cd08fe4c85f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 435.5,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12557,
"elapsed_seconds": 1.3457361339999352,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}