SRR15676126 · Gut microbiome
Metagenome of Peromyscus leucopus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 18.7948 |
| Ligilactobacillus animalis | Ligilactobacillus | 13.5731 |
| Ligilactobacillus murinus | Ligilactobacillus | 12.7228 |
| Prevotella heparinolytica | Prevotella | 7.8737 |
| Ligilactobacillus aviarius | Ligilactobacillus | 7.4345 |
| Ligilactobacillus agilis | Ligilactobacillus | 7.1658 |
| Prevotella ruminicola | Prevotella | 4.8692 |
| Lactobacillus johnsonii | Lactobacillus | 4.7577 |
| Ligilactobacillus apodemi | Ligilactobacillus | 3.1692 |
| Prevotella brevis | Prevotella | 2.2735 |
| Ligilactobacillus salivarius | Ligilactobacillus | 2.0174 |
| Ligilactobacillus faecis | Ligilactobacillus | 1.3640 |
| Lactobacillus psittaci | Lactobacillus | 1.2595 |
| Prevotella oris | Prevotella | 1.2440 |
| Lactobacillus delbrueckii | Lactobacillus | 1.1253 |
| Prevotella intermedia | Prevotella | 1.0750 |
| Helicobacter hepaticus | Helicobacter | 1.0609 |
| Helicobacter aurati | Helicobacter | 1.0444 |
| Prevotella buccae | Prevotella | 0.9738 |
| Lactobacillus acetotolerans | Lactobacillus | 0.9457 |
| Prevotella copri | Prevotella | 0.8526 |
| Helicobacter acinonychis | Helicobacter | 0.7545 |
| Helicobacter pylori | Helicobacter | 0.6944 |
| Lactobacillus hominis | Lactobacillus | 0.6287 |
| Prevotella loescheii | Prevotella | 0.5034 |
| Prevotella buccalis | Prevotella | 0.4172 |
| Helicobacter bilis | Helicobacter | 0.4157 |
| Helicobacter macacae | Helicobacter | 0.3481 |
| Prevotella bivia | Prevotella | 0.3380 |
| Helicobacter canicola | Helicobacter | 0.3031 |
Saved public metadata
{
"run_accession": "SRR15676126",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156619",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "431401",
"base_count": "572661350",
"fastq_bytes": "522411036",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/026/SRR15676126/SRR15676126_1.fastq.gz",
"sample_title": "Metagenome of Peromyscus leucopus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d31bac3781b8803dfd222b35be85197769bee9eb047ebec8b4a09de2e8eaf1cb",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1437.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 11494,
"elapsed_seconds": 1.4245123369998964,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}