SRR15676124 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus psittaci | Lactobacillus | 23.6363 |
| Lactobacillus johnsonii | Lactobacillus | 17.4660 |
| Limosilactobacillus reuteri | Limosilactobacillus | 8.0494 |
| Ligilactobacillus murinus | Ligilactobacillus | 5.4032 |
| Lactobacillus delbrueckii | Lactobacillus | 4.6795 |
| Lactobacillus jensenii | Lactobacillus | 4.6120 |
| Lactobacillus helveticus | Lactobacillus | 4.1426 |
| Mucispirillum schaedleri | Mucispirillum | 3.8317 |
| Ligilactobacillus salivarius | Ligilactobacillus | 3.6584 |
| Lactobacillus gasseri | Lactobacillus | 3.3556 |
| Helicobacter apodemus | Helicobacter | 3.1663 |
| Helicobacter pylori | Helicobacter | 1.5902 |
| Helicobacter mastomyrinus | Helicobacter | 1.5790 |
| Helicobacter hepaticus | Helicobacter | 1.3750 |
| Helicobacter fennelliae | Helicobacter | 1.2105 |
| Helicobacter typhlonius | Helicobacter | 1.1968 |
| Helicobacter apri | Helicobacter | 1.0944 |
| Limosilactobacillus oris | Limosilactobacillus | 0.9898 |
| Fusobacterium nucleatum | Fusobacterium | 0.8959 |
| Ligilactobacillus saerimneri | Ligilactobacillus | 0.8931 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.7267 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.6892 |
| Helicobacter acinonychis | Helicobacter | 0.5294 |
| Helicobacter canicola | Helicobacter | 0.5269 |
| Lactobacillus amylovorus | Lactobacillus | 0.5201 |
| Fusobacterium ulcerans | Fusobacterium | 0.4872 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.4852 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.4613 |
| Lactobacillus taiwanensis | Lactobacillus | 0.4610 |
| Lactobacillus acetotolerans | Lactobacillus | 0.4222 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 0.3958 |
| Ligilactobacillus acidipiscis | Ligilactobacillus | 0.3709 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.3569 |
| Fusobacterium necrophorum | Fusobacterium | 0.2700 |
| Helicobacter macacae | Helicobacter | 0.2376 |
| Fusobacterium periodonticum | Fusobacterium | 0.2339 |
Saved public metadata
{
"run_accession": "SRR15676124",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156621",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "660446",
"base_count": "1023278040",
"fastq_bytes": "1024123526",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/024/SRR15676124/SRR15676124_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "acb9ec3d7afe4282c0209822efb362331ebcbc94bec8e4ef10c3f562c47b768e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1589.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 9574,
"elapsed_seconds": 1.8088263970000753,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 18,
"fraction": 0.09,
"adapters_found": {
"27F": 18
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}