SRR15676116 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 17.8514 |
| Helicobacter apodemus | Helicobacter | 13.1845 |
| Ligilactobacillus salivarius | Ligilactobacillus | 12.7728 |
| Helicobacter hepaticus | Helicobacter | 5.0459 |
| Helicobacter typhlonius | Helicobacter | 4.9596 |
| Blautia producta | Blautia | 4.9536 |
| Mucispirillum schaedleri | Mucispirillum | 3.5776 |
| Helicobacter pylori | Helicobacter | 3.2681 |
| Helicobacter fennelliae | Helicobacter | 3.2027 |
| Helicobacter apri | Helicobacter | 2.9867 |
| Blautia faecis | Blautia | 2.7515 |
| Blautia hansenii | Blautia | 2.5460 |
| Helicobacter canicola | Helicobacter | 2.5298 |
| Ligilactobacillus saerimneri | Ligilactobacillus | 2.4947 |
| Helicobacter mastomyrinus | Helicobacter | 2.3057 |
| Ligilactobacillus aviarius | Ligilactobacillus | 2.1056 |
| Helicobacter acinonychis | Helicobacter | 2.0714 |
| Ligilactobacillus acidipiscis | Ligilactobacillus | 1.8406 |
| Ligilactobacillus agilis | Ligilactobacillus | 1.4942 |
| Odoribacter splanchnicus | Odoribacter | 1.3083 |
| Helicobacter macacae | Helicobacter | 1.2986 |
| Ligilactobacillus animalis | Ligilactobacillus | 1.0228 |
| Helicobacter pullorum | Helicobacter | 1.0171 |
| Helicobacter bilis | Helicobacter | 1.0092 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.9923 |
| Ruminococcus champanellensis | Ruminococcus | 0.8428 |
| Odoribacter laneus | Odoribacter | 0.5665 |
Saved public metadata
{
"run_accession": "SRR15676116",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156628",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "501139",
"base_count": "748525605",
"fastq_bytes": "756488499",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/016/SRR15676116/SRR15676116_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e9a1105a3d2cd4702c73765a572890586d4b2956e42880df2d0005fcd662dc6c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1568.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14153,
"elapsed_seconds": 1.379665421999789,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 15,
"fraction": 0.075,
"adapters_found": {
"27F": 15
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}