SRR15676108 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 15.0468 |
| Ligilactobacillus aviarius | Ligilactobacillus | 11.9043 |
| Ligilactobacillus agilis | Ligilactobacillus | 9.3149 |
| Bacteroides ovatus | Bacteroides | 8.6402 |
| Bacteroides zoogleoformans | Bacteroides | 8.4069 |
| Parabacteroides distasonis | Parabacteroides | 6.3862 |
| Muribaculum intestinale | Muribaculum | 5.0951 |
| Alistipes putredinis | Alistipes | 3.4325 |
| Bacteroides cellulosilyticus | Bacteroides | 2.4012 |
| Bacteroides uniformis | Bacteroides | 2.3274 |
| Ligilactobacillus apodemi | Ligilactobacillus | 2.2791 |
| Helicobacter acinonychis | Helicobacter | 2.2471 |
| Bacteroides fragilis | Bacteroides | 2.1780 |
| Clostridium ramosum | Clostridium | 2.0031 |
| Bacteroides acidifaciens | Bacteroides | 1.9765 |
| Ligilactobacillus animalis | Ligilactobacillus | 1.7135 |
| Helicobacter ganmani | Helicobacter | 1.6758 |
| Parabacteroides merdae | Parabacteroides | 1.4886 |
| Helicobacter apodemus | Helicobacter | 1.2446 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.0037 |
| Parabacteroides faecis | Parabacteroides | 0.9593 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.9565 |
| Alistipes finegoldii | Alistipes | 0.8956 |
| Bacteroides stercoris | Bacteroides | 0.7886 |
| Bacteroides rodentium | Bacteroides | 0.7865 |
| Exiguobacterium acetylicum | Exiguobacterium | 0.7396 |
| Alistipes dispar | Alistipes | 0.6488 |
| Helicobacter rodentium | Helicobacter | 0.5964 |
| Bacteroides oleiciplenus | Bacteroides | 0.5857 |
| Helicobacter macacae | Helicobacter | 0.5797 |
| Helicobacter pullorum | Helicobacter | 0.5173 |
| Bacteroides eggerthii | Bacteroides | 0.4297 |
| Helicobacter bilis | Helicobacter | 0.3883 |
| Helicobacter apri | Helicobacter | 0.3626 |
Saved public metadata
{
"run_accession": "SRR15676108",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156591",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "273561",
"base_count": "263745031",
"fastq_bytes": "269636523",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/008/SRR15676108/SRR15676108_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "dbb7e1969cc2f9d4ad0a3bc368d015ff704f1a5952a361734e1c26f24e41a814",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1404.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13402,
"elapsed_seconds": 1.3359386170000107,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 5,
"fraction": 0.025,
"adapters_found": {
"BC_FLANK": 5
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}