SRR15676107 · Gut microbiome
Metagenome of Peromyscus leucopus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus psittaci | Lactobacillus | 30.3941 |
| Lactobacillus helveticus | Lactobacillus | 19.1429 |
| Limosilactobacillus reuteri | Limosilactobacillus | 10.7099 |
| Lactobacillus delbrueckii | Lactobacillus | 6.5986 |
| Lactobacillus johnsonii | Lactobacillus | 5.7850 |
| Lactobacillus jensenii | Lactobacillus | 3.9788 |
| Ligilactobacillus murinus | Ligilactobacillus | 3.6558 |
| Ligilactobacillus salivarius | Ligilactobacillus | 3.2215 |
| Lactobacillus acetotolerans | Lactobacillus | 2.8444 |
| Lactobacillus amylovorus | Lactobacillus | 2.2618 |
| Lactobacillus gasseri | Lactobacillus | 2.0466 |
| Ligilactobacillus animalis | Ligilactobacillus | 1.1445 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.1130 |
| Limosilactobacillus oris | Limosilactobacillus | 0.8149 |
| Lactobacillus gallinarum | Lactobacillus | 0.7927 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.7401 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.6683 |
| Ligilactobacillus saerimneri | Ligilactobacillus | 0.6509 |
| Lactobacillus crispatus | Lactobacillus | 0.4819 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.4609 |
| Muribaculum intestinale | Muribaculum | 0.4527 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.4051 |
| Ligilactobacillus faecis | Ligilactobacillus | 0.3404 |
| Limosilactobacillus antri | Limosilactobacillus | 0.3187 |
| Ligilactobacillus acidipiscis | Ligilactobacillus | 0.3116 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 0.2817 |
| Lactobacillus taiwanensis | Lactobacillus | 0.2346 |
| Ligilactobacillus apodemi | Ligilactobacillus | 0.1485 |
Saved public metadata
{
"run_accession": "SRR15676107",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156636",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "155014",
"base_count": "237886250",
"fastq_bytes": "230687605",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/007/SRR15676107/SRR15676107_1.fastq.gz",
"sample_title": "Metagenome of Peromyscus leucopus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c24dbad35e59af4dbb61f43b01923a52963bd5b4ed8f6626ab3447fa0b10fcb7",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1595.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5175,
"elapsed_seconds": 2.093287519000114,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 8,
"fraction": 0.04,
"adapters_found": {
"27F": 8
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}