SRR15676102 · Gut microbiome
Metagenome of Peromyscus leucopus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ligilactobacillus murinus | Ligilactobacillus | 18.7888 |
| Streptococcus salivarius | Streptococcus | 16.7517 |
| Ligilactobacillus salivarius | Ligilactobacillus | 16.5636 |
| Streptococcus anginosus | Streptococcus | 6.3462 |
| Ligilactobacillus animalis | Ligilactobacillus | 6.0885 |
| Streptococcus downei | Streptococcus | 5.9245 |
| Ligilactobacillus aviarius | Ligilactobacillus | 4.0107 |
| Streptococcus gordonii | Streptococcus | 3.0362 |
| Streptococcus equinus | Streptococcus | 3.0210 |
| Lactobacillus psittaci | Lactobacillus | 2.9857 |
| Ligilactobacillus saerimneri | Ligilactobacillus | 2.7484 |
| Ligilactobacillus agilis | Ligilactobacillus | 2.7289 |
| Ligilactobacillus faecis | Ligilactobacillus | 1.9999 |
| Ligilactobacillus acidipiscis | Ligilactobacillus | 1.7490 |
| Streptococcus pyogenes | Streptococcus | 1.5789 |
| Streptococcus mitis | Streptococcus | 1.0332 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.7897 |
| Lactobacillus johnsonii | Lactobacillus | 0.6742 |
| Streptococcus gallolyticus | Streptococcus | 0.5777 |
| Ligilactobacillus apodemi | Ligilactobacillus | 0.5590 |
| Streptococcus troglodytidis | Streptococcus | 0.4068 |
| Lactobacillus helveticus | Lactobacillus | 0.3992 |
| Streptococcus pneumoniae | Streptococcus | 0.3551 |
| Streptococcus alactolyticus | Streptococcus | 0.3158 |
| Lactobacillus delbrueckii | Lactobacillus | 0.3098 |
| Streptococcus sanguinis | Streptococcus | 0.2573 |
Saved public metadata
{
"run_accession": "SRR15676102",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156641",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "374602",
"base_count": "560565731",
"fastq_bytes": "554056733",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/002/SRR15676102/SRR15676102_1.fastq.gz",
"sample_title": "Metagenome of Peromyscus leucopus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "15e79f710e4b510907f8191a70ca86db8ef1986b3934095cb3998cb96b141439",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1576.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 9696,
"elapsed_seconds": 1.5419028930000422,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 16,
"fraction": 0.08,
"adapters_found": {
"27F": 16
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}