SRR15676100 · Gut microbiome
Metagenome of Peromyscus leucopus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus psittaci | Lactobacillus | 33.2323 |
| Lactobacillus helveticus | Lactobacillus | 22.6639 |
| Lactobacillus delbrueckii | Lactobacillus | 7.8541 |
| Limosilactobacillus reuteri | Limosilactobacillus | 6.5911 |
| Lactobacillus johnsonii | Lactobacillus | 6.1669 |
| Lactobacillus jensenii | Lactobacillus | 4.6999 |
| Lactobacillus acetotolerans | Lactobacillus | 3.3743 |
| Lactobacillus amylovorus | Lactobacillus | 2.6234 |
| Lactobacillus gasseri | Lactobacillus | 2.3995 |
| Lactobacillus gallinarum | Lactobacillus | 1.1508 |
| Helicobacter hepaticus | Helicobacter | 1.1352 |
| Mucispirillum schaedleri | Mucispirillum | 1.0370 |
| Helicobacter typhlonius | Helicobacter | 0.7851 |
| Helicobacter fennelliae | Helicobacter | 0.7244 |
| Muribaculum intestinale | Muribaculum | 0.6439 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.6122 |
| Helicobacter apri | Helicobacter | 0.5864 |
| Helicobacter pylori | Helicobacter | 0.4895 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.4797 |
| Lactobacillus crispatus | Lactobacillus | 0.4653 |
| Limosilactobacillus oris | Limosilactobacillus | 0.4001 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.3791 |
| Helicobacter aurati | Helicobacter | 0.3134 |
| Helicobacter canicola | Helicobacter | 0.3078 |
| Helicobacter acinonychis | Helicobacter | 0.2999 |
| Lactobacillus taiwanensis | Lactobacillus | 0.2492 |
| Helicobacter cholecystus | Helicobacter | 0.1839 |
| Limosilactobacillus antri | Limosilactobacillus | 0.1514 |
Saved public metadata
{
"run_accession": "SRR15676100",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156643",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "218753",
"base_count": "337004966",
"fastq_bytes": "326231139",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/000/SRR15676100/SRR15676100_1.fastq.gz",
"sample_title": "Metagenome of Peromyscus leucopus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d1121740ac5b168ae1615116de61e4fe0df70f60285cb49846c365d5cfde802f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1594.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5241,
"elapsed_seconds": 1.7209582699999828,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 13,
"fraction": 0.065,
"adapters_found": {
"27F": 13
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}