SRR15676098 · Gut microbiome
Metagenome of Peromyscus leucopus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Ruminococcus champanellensis | Ruminococcus | 22.4204 |
| Lactobacillus psittaci | Lactobacillus | 18.9268 |
| Lactobacillus helveticus | Lactobacillus | 12.9672 |
| Ruminococcus flavefaciens | Ruminococcus | 5.3586 |
| Lactobacillus delbrueckii | Lactobacillus | 4.8793 |
| Ruminococcus callidus | Ruminococcus | 4.6438 |
| Ruminococcus bromii | Ruminococcus | 4.1424 |
| Lactobacillus johnsonii | Lactobacillus | 3.4417 |
| Lactobacillus jensenii | Lactobacillus | 2.5768 |
| Muribaculum intestinale | Muribaculum | 2.0274 |
| Anaerostipes hadrus | Anaerostipes | 2.0251 |
| Lactobacillus acetotolerans | Lactobacillus | 1.9570 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.8663 |
| Lactobacillus amylovorus | Lactobacillus | 1.3510 |
| Lactobacillus gasseri | Lactobacillus | 1.1855 |
| Ligilactobacillus murinus | Ligilactobacillus | 1.1031 |
| Alistipes dispar | Alistipes | 1.0338 |
| Ligilactobacillus salivarius | Ligilactobacillus | 0.8035 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.7898 |
| Helicobacter apri | Helicobacter | 0.7251 |
| Helicobacter apodemus | Helicobacter | 0.6465 |
| Helicobacter fennelliae | Helicobacter | 0.6095 |
| Anaerostipes butyraticus | Anaerostipes | 0.5769 |
| Helicobacter bilis | Helicobacter | 0.5667 |
| Alistipes inops | Alistipes | 0.4834 |
| Alistipes megaguti | Alistipes | 0.4565 |
| Helicobacter pylori | Helicobacter | 0.4431 |
| Helicobacter hepaticus | Helicobacter | 0.4409 |
| Helicobacter acinonychis | Helicobacter | 0.4162 |
| Lactobacillus crispatus | Lactobacillus | 0.4156 |
| Lactobacillus gallinarum | Lactobacillus | 0.3792 |
| Helicobacter typhlonius | Helicobacter | 0.3409 |
Saved public metadata
{
"run_accession": "SRR15676098",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156645",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "211237",
"base_count": "321365757",
"fastq_bytes": "324853999",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/098/SRR15676098/SRR15676098_1.fastq.gz",
"sample_title": "Metagenome of Peromyscus leucopus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "4b7f759f476374078e0c35015170589602ace612fef5c3b7391f1e8c6a47ff72",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1562.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12459,
"elapsed_seconds": 1.3371895239999958,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 17,
"fraction": 0.085,
"adapters_found": {
"27F": 17
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}