SRR15676097 · Gut microbiome
Metagenome of Mus musculus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 30.4602 |
| Bacteroides zoogleoformans | Bacteroides | 11.6805 |
| Bacteroides ovatus | Bacteroides | 9.6276 |
| Parabacteroides distasonis | Parabacteroides | 5.5115 |
| Parabacteroides merdae | Parabacteroides | 4.0231 |
| Streptococcus mitis | Streptococcus | 3.5241 |
| Bacteroides acidifaciens | Bacteroides | 3.5086 |
| Bacteroides cellulosilyticus | Bacteroides | 3.4657 |
| Helicobacter apodemus | Helicobacter | 2.5171 |
| Parabacteroides faecis | Parabacteroides | 2.4671 |
| Bacteroides fragilis | Bacteroides | 2.3082 |
| Malacoplasma muris | Malacoplasma | 2.1581 |
| Bacteroides uniformis | Bacteroides | 2.0612 |
| Malacoplasma iowae | Malacoplasma | 2.0173 |
| Streptococcus downei | Streptococcus | 1.9825 |
| Helicobacter acinonychis | Helicobacter | 1.5967 |
| Parabacteroides gordonii | Parabacteroides | 1.4520 |
| Schaedlerella arabinosiphila | Schaedlerella | 1.4229 |
| Streptococcus sanguinis | Streptococcus | 1.3603 |
| Streptococcus salivarius | Streptococcus | 1.2593 |
| Helicobacter hepaticus | Helicobacter | 1.1762 |
| Streptococcus alactolyticus | Streptococcus | 1.1344 |
| Bacteroides stercoris | Bacteroides | 1.1111 |
| Helicobacter mastomyrinus | Helicobacter | 1.0843 |
| Helicobacter pylori | Helicobacter | 0.5744 |
| Helicobacter apri | Helicobacter | 0.5156 |
Saved public metadata
{
"run_accession": "SRR15676097",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156592",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "371195",
"base_count": "367316284",
"fastq_bytes": "375844244",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/097/SRR15676097/SRR15676097_1.fastq.gz",
"sample_title": "Metagenome of Mus musculus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "6ef3d1c34054b8bb50a44c2b29c6c00f1f7e4936de475ce153a2c51d0207da0d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1393.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 15638,
"elapsed_seconds": 1.4156265249999933,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}