SRR15676090 · Gut microbiome
Metagenome of Rattus norvegicus
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 15.5093 |
| Prevotella ruminicola | Prevotella | 10.6545 |
| Blautia hansenii | Blautia | 6.3952 |
| Blautia producta | Blautia | 6.3489 |
| Lactobacillus johnsonii | Lactobacillus | 5.9223 |
| Romboutsia lituseburensis | Romboutsia | 5.3992 |
| Lactobacillus delbrueckii | Lactobacillus | 5.3003 |
| Faecalibacterium prausnitzii | Faecalibacterium | 4.7297 |
| Lactobacillus acetotolerans | Lactobacillus | 4.5237 |
| Lactobacillus helveticus | Lactobacillus | 3.9333 |
| Prevotella brevis | Prevotella | 3.5031 |
| Lactobacillus intestinalis | Lactobacillus | 3.4919 |
| Romboutsia timonensis | Romboutsia | 2.5304 |
| Ligilactobacillus murinus | Ligilactobacillus | 2.5045 |
| Lactobacillus psittaci | Lactobacillus | 2.3848 |
| Blautia luti | Blautia | 2.3678 |
| Blautia glucerasea | Blautia | 2.0793 |
| Ligilactobacillus aviarius | Ligilactobacillus | 1.9038 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.7487 |
| Ligilactobacillus agilis | Ligilactobacillus | 1.4741 |
| Prevotella buccalis | Prevotella | 1.4302 |
| Prevotella heparinolytica | Prevotella | 1.2570 |
| Prevotella intermedia | Prevotella | 1.2310 |
| Blautia obeum | Blautia | 1.2290 |
| Blautia schinkii | Blautia | 1.2142 |
| Romboutsia ilealis | Romboutsia | 0.9336 |
Saved public metadata
{
"run_accession": "SRR15676090",
"study_accession": "PRJNA759117",
"sample_accession": "SAMN21156594",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "605345",
"base_count": "327361975",
"fastq_bytes": "328272226",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR156/090/SRR15676090/SRR15676090_1.fastq.gz",
"sample_title": "Metagenome of Rattus norvegicus",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "843b5d762c4c5528f1d9b0f0aa20d47a0b3c423bd7596b25bee6f23821756f1e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 277.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 17431,
"elapsed_seconds": 1.0225664399999914,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}