SRR13402254 · Gut microbiome

MIMARKS Survey related sample from gut metagenome

no eligible reads

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Saved public metadata

{
  "run_accession": "SRR13402254",
  "study_accession": "PRJNA691201",
  "sample_accession": "SAMN17283443",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "PCR",
  "read_count": "49851",
  "base_count": "41976248",
  "fastq_bytes": "40515304",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR134/054/SRR13402254/SRR13402254_1.fastq.gz",
  "sample_title": "MIMARKS Survey related sample from gut metagenome",
  "scientific_name": "gut metagenome"
}

Public files

SRR13402254_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "no_eligible_reads",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "8ae998b90b3533fdaf483342559d020087e6864aaf3d582286d1c44adf2d8b11",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 38.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {},
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}