ERR16795862 · Gut microbiome
TBAGUMPS_042b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Catenibacterium mitsuokai | Catenibacterium | 16.5164 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 14.0344 |
| Blautia glucerasea | Blautia | 12.8175 |
| Agathobacter ruminis | Agathobacter | 11.2944 |
| Lachnospira eligens | Lachnospira | 8.0006 |
| Blautia producta | Blautia | 6.3639 |
| Romboutsia timonensis | Romboutsia | 3.9343 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.5476 |
| Catenisphaera adipataccumulans | Catenisphaera | 3.2122 |
| Anaerostipes hadrus | Anaerostipes | 3.0420 |
| Faecalibacterium prausnitzii | Faecalibacterium | 2.6379 |
| Lachnospira pectinoschiza | Lachnospira | 1.8834 |
| Blautia faecis | Blautia | 1.8608 |
| Dorea formicigenerans | Dorea | 1.7864 |
| Streptococcus thermophilus | Streptococcus | 1.6931 |
| Streptococcus salivarius | Streptococcus | 1.2259 |
| Romboutsia sedimentorum | Romboutsia | 0.8167 |
| Anaerostipes butyraticus | Anaerostipes | 0.6921 |
| Blautia wexlerae | Blautia | 0.6565 |
| Dorea longicatena | Dorea | 0.6205 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.6134 |
| Collinsella aerofaciens | Collinsella | 0.5711 |
| Bifidobacterium longum | Bifidobacterium | 0.5218 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.3384 |
| Blautia hansenii | Blautia | 0.3236 |
| Blautia luti | Blautia | 0.2756 |
| Subdoligranulum variabile | Subdoligranulum | 0.1965 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.1904 |
| Romboutsia lituseburensis | Romboutsia | 0.1775 |
| Negativibacillus massiliensis | Negativibacillus | 0.1551 |
Saved public metadata
{
"run_accession": "ERR16795862",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950444",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "113329",
"base_count": "167713784",
"fastq_bytes": "124590121",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/062/ERR16795862/ERR16795862.fastq.gz",
"sample_title": "TBAGUMPS_042b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a6ae233dd1d31c0348ef1df3d1f6e7b29e77addeeabaf47756880a34ef43fd4d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1492.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5740,
"elapsed_seconds": 1.5425257419999525,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 48,
"fraction": 0.24,
"adapters_found": {
"BC_FLANK": 42,
"27F": 6
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}