ERR16795854 · Gut microbiome
TBAGUMPS_040b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.6691 |
| Blautia glucerasea | Blautia | 18.7318 |
| Phocaeicola vulgatus | Phocaeicola | 11.0977 |
| Lachnospira eligens | Lachnospira | 8.0521 |
| Blautia producta | Blautia | 6.2280 |
| Anaerostipes hadrus | Anaerostipes | 4.4192 |
| Hominimerdicola aceti | Hominimerdicola | 3.7114 |
| Dialister invisus | Dialister | 2.7137 |
| Ruminococcus bromii | Ruminococcus | 1.4214 |
| Blautia hansenii | Blautia | 1.4154 |
| Ruminococcus champanellensis | Ruminococcus | 1.3812 |
| Ruminococcus callidus | Ruminococcus | 1.2400 |
| Flavonifractor plautii | Flavonifractor | 1.2170 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.0035 |
| Blautia luti | Blautia | 0.9783 |
| Intestinimonas butyriciproducens | Intestinimonas | 0.9636 |
| Bacteroides cellulosilyticus | Bacteroides | 0.7613 |
| Bacteroides ovatus | Bacteroides | 0.7489 |
| Bacteroides fragilis | Bacteroides | 0.7447 |
| Parabacteroides distasonis | Parabacteroides | 0.7200 |
| Dorea formicigenerans | Dorea | 0.6847 |
| Blautia faecis | Blautia | 0.6813 |
| Bacteroides uniformis | Bacteroides | 0.6216 |
| Bacteroides xylanisolvens | Bacteroides | 0.4817 |
| Blautia wexlerae | Blautia | 0.4633 |
| Phocaeicola dorei | Phocaeicola | 0.3671 |
| Parabacteroides merdae | Parabacteroides | 0.3459 |
| Bacteroides nordii | Bacteroides | 0.3159 |
| Bacteroides intestinalis | Bacteroides | 0.2704 |
| Bacteroides zoogleoformans | Bacteroides | 0.2647 |
| Agathobaculum desmolans | Agathobaculum | 0.2631 |
| Dialister hominis | Dialister | 0.2562 |
| Bacteroides eggerthii | Bacteroides | 0.2098 |
| Phocaeicola massiliensis | Phocaeicola | 0.2078 |
| Bacteroides caccae | Bacteroides | 0.1842 |
| Hominimerdicola alba | Hominimerdicola | 0.1641 |
Saved public metadata
{
"run_accession": "ERR16795854",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950436",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "89588",
"base_count": "132460784",
"fastq_bytes": "112297871",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/054/ERR16795854/ERR16795854.fastq.gz",
"sample_title": "TBAGUMPS_040b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "52701eef84826745f77b7bb21648e67601320d4f34faaf2b7253436c4062c3f7",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5448,
"elapsed_seconds": 1.649019085999953,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 17,
"fraction": 0.085,
"adapters_found": {
"27F": 5,
"BC_FLANK": 12
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}