ERR16795853 · Gut microbiome
TBAGUMPS_040a_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 27.0196 |
| Blautia glucerasea | Blautia | 16.7661 |
| Hominimerdicola aceti | Hominimerdicola | 12.8485 |
| Blautia producta | Blautia | 6.8064 |
| Phocaeicola vulgatus | Phocaeicola | 4.2814 |
| Dialister invisus | Dialister | 3.5216 |
| Lachnospira eligens | Lachnospira | 3.4686 |
| Ruminococcus champanellensis | Ruminococcus | 3.2177 |
| Intestinimonas butyriciproducens | Intestinimonas | 3.2008 |
| Eubacterium oxidoreducens | Eubacterium | 2.1042 |
| Anaerostipes hadrus | Anaerostipes | 1.8232 |
| Ruminococcus bromii | Ruminococcus | 1.6186 |
| Ruminococcus callidus | Ruminococcus | 1.5573 |
| Flavonifractor plautii | Flavonifractor | 1.5154 |
| Blautia hansenii | Blautia | 1.3109 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.2815 |
| Blautia luti | Blautia | 0.9900 |
| Romboutsia timonensis | Romboutsia | 0.8329 |
| Dorea formicigenerans | Dorea | 0.5626 |
| Hominimerdicola alba | Hominimerdicola | 0.4904 |
| Blautia wexlerae | Blautia | 0.4881 |
| Parabacteroides distasonis | Parabacteroides | 0.4749 |
| Eubacterium ruminantium | Eubacterium | 0.4613 |
| Blautia faecis | Blautia | 0.3949 |
| Dialister hominis | Dialister | 0.3580 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 0.3116 |
| Agathobacter ruminis | Agathobacter | 0.3063 |
| Parabacteroides merdae | Parabacteroides | 0.2849 |
| Ruminococcus flavefaciens | Ruminococcus | 0.2733 |
| Negativibacillus massiliensis | Negativibacillus | 0.2689 |
| Eubacterium ventriosum | Eubacterium | 0.2543 |
| Agathobaculum desmolans | Agathobaculum | 0.2411 |
| Dialister histaminiformans | Dialister | 0.2411 |
| Phocaeicola massiliensis | Phocaeicola | 0.1827 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.1607 |
| Lactobacillus psittaci | Lactobacillus | 0.0804 |
Saved public metadata
{
"run_accession": "ERR16795853",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950435",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "92254",
"base_count": "135931600",
"fastq_bytes": "120853269",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/053/ERR16795853/ERR16795853.fastq.gz",
"sample_title": "TBAGUMPS_040a_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "bf142b9fe8ffa8f796ef098841ee92138f309ed8957e3f7ba9846011701ed7d2",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1487.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6182,
"elapsed_seconds": 1.9661996400000135,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 15,
"fraction": 0.075,
"adapters_found": {
"BC_FLANK": 7,
"27F": 8
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}