ERR16795842 · Gut microbiome
TBAGUMPS_037b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 25.0489 |
| Anaerostipes hadrus | Anaerostipes | 11.0123 |
| Blautia glucerasea | Blautia | 10.4017 |
| Blautia producta | Blautia | 8.7581 |
| Phocaeicola vulgatus | Phocaeicola | 6.4106 |
| Roseburia hominis | Roseburia | 6.1838 |
| Phocaeicola coprocola | Phocaeicola | 5.5525 |
| Roseburia intestinalis | Roseburia | 4.3834 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.9510 |
| Dialister hominis | Dialister | 2.1700 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.0665 |
| Hominimerdicola aceti | Hominimerdicola | 1.7831 |
| Phocaeicola massiliensis | Phocaeicola | 1.2742 |
| Bacteroides xylanisolvens | Bacteroides | 1.2468 |
| Subdoligranulum variabile | Subdoligranulum | 1.1416 |
| Blautia hansenii | Blautia | 1.0888 |
| Megasphaera massiliensis | Megasphaera | 0.7538 |
| Sutterella massiliensis | Sutterella | 0.7158 |
| Eubacterium ventriosum | Eubacterium | 0.6779 |
| Blautia faecis | Blautia | 0.6588 |
| Dorea formicigenerans | Dorea | 0.5068 |
| Blautia wexlerae | Blautia | 0.4219 |
| Bacteroides fragilis | Bacteroides | 0.4102 |
| Eubacterium oxidoreducens | Eubacterium | 0.4044 |
| Blautia luti | Blautia | 0.3925 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.3737 |
| Bacteroides uniformis | Bacteroides | 0.3551 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.3486 |
| Dialister succinatiphilus | Dialister | 0.3231 |
| Phocaeicola dorei | Phocaeicola | 0.2756 |
| Streptococcus thermophilus | Streptococcus | 0.2661 |
| Sutterella megalosphaeroides | Sutterella | 0.2471 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.2191 |
| Bacteroides caccae | Bacteroides | 0.1900 |
| Anaerostipes butyraticus | Anaerostipes | 0.1871 |
| Roseburia inulinivorans | Roseburia | 0.1721 |
| Dorea longicatena | Dorea | 0.1647 |
| Blautia marasmi | Blautia | 0.1632 |
| Bifidobacterium longum | Bifidobacterium | 0.1584 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.1409 |
Saved public metadata
{
"run_accession": "ERR16795842",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950424",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "65364",
"base_count": "96313007",
"fastq_bytes": "81560582",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/042/ERR16795842/ERR16795842.fastq.gz",
"sample_title": "TBAGUMPS_037b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "194f43e0b2393198ff4c6b74a0d951721701809d5f6cb684edf756d631b9fc0f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1489.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3963,
"elapsed_seconds": 1.7432820600000696,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 11,
"fraction": 0.055,
"adapters_found": {
"BC_FLANK": 7,
"27F": 4
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}