ERR16795838 · Gut microbiome
TBAGUMPS_036b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 27.3371 |
| Anaerostipes hadrus | Anaerostipes | 13.0817 |
| Blautia glucerasea | Blautia | 9.4105 |
| Hominimerdicola aceti | Hominimerdicola | 8.7813 |
| Blautia producta | Blautia | 6.9871 |
| Roseburia hominis | Roseburia | 6.2066 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 5.9406 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.6883 |
| Lachnospira eligens | Lachnospira | 3.4443 |
| Roseburia intestinalis | Roseburia | 1.8523 |
| Ruminococcus champanellensis | Ruminococcus | 1.2806 |
| Dorea formicigenerans | Dorea | 1.1139 |
| Blautia hansenii | Blautia | 0.9866 |
| Subdoligranulum variabile | Subdoligranulum | 0.8378 |
| Roseburia inulinivorans | Roseburia | 0.7971 |
| Dialister invisus | Dialister | 0.7669 |
| Blautia faecis | Blautia | 0.7339 |
| Gemmiger formicilis | Gemmiger | 0.7249 |
| Ruminococcus callidus | Ruminococcus | 0.5364 |
| Hominimerdicola alba | Hominimerdicola | 0.4650 |
| Blautia luti | Blautia | 0.3878 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.3713 |
| Streptococcus salivarius | Streptococcus | 0.3672 |
| Anaerostipes butyraticus | Anaerostipes | 0.3565 |
| Roseburia faecis | Roseburia | 0.3473 |
| Ruminococcus bromii | Ruminococcus | 0.3078 |
| Agathobaculum desmolans | Agathobaculum | 0.3043 |
| Ruminococcus flavefaciens | Ruminococcus | 0.2633 |
| Christensenella minuta | Christensenella | 0.2253 |
| Dorea longicatena | Dorea | 0.2074 |
| Bacteroides fragilis | Bacteroides | 0.1948 |
| Allocoprococcus comes | Allocoprococcus | 0.1915 |
| Streptococcus thermophilus | Streptococcus | 0.1867 |
| Lactococcus lactis | Lactococcus | 0.1643 |
| Blautia wexlerae | Blautia | 0.1518 |
Saved public metadata
{
"run_accession": "ERR16795838",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950420",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "92429",
"base_count": "136701694",
"fastq_bytes": "113956346",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/038/ERR16795838/ERR16795838.fastq.gz",
"sample_title": "TBAGUMPS_036b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7b4e4f194ce906e26b0812b93d54c5dbf2701f2998ed05158665197177b41991",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3405,
"elapsed_seconds": 2.5986078899999256,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 17,
"fraction": 0.085,
"adapters_found": {
"BC_FLANK": 13,
"27F": 4
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}