ERR16795834 · Gut microbiome
TBAGUMPS_035b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.9386 |
| Prevotella copri | Prevotella | 22.5720 |
| Blautia glucerasea | Blautia | 5.8098 |
| Mitsuokella jalaludinii | Mitsuokella | 5.4217 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.3905 |
| Blautia producta | Blautia | 4.1167 |
| Phocaeicola vulgatus | Phocaeicola | 4.0477 |
| Prevotella jejuni | Prevotella | 3.5869 |
| Dialister invisus | Dialister | 2.8255 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.3285 |
| Agathobacter ruminis | Agathobacter | 2.0461 |
| Dorea formicigenerans | Dorea | 1.4083 |
| Acidaminococcus intestini | Acidaminococcus | 1.3150 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.1248 |
| Prevotella nigrescens | Prevotella | 0.9410 |
| Anaerostipes hadrus | Anaerostipes | 0.9228 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.8850 |
| Anaerotignum lactatifermentans | Anaerotignum | 0.7861 |
| Sutterella faecalis | Sutterella | 0.6757 |
| Flavonifractor plautii | Flavonifractor | 0.6378 |
| Mitsuokella multacida | Mitsuokella | 0.5966 |
| Dialister hominis | Dialister | 0.5934 |
| Phocaeicola massiliensis | Phocaeicola | 0.5854 |
| Blautia hansenii | Blautia | 0.5343 |
| Alistipes putredinis | Alistipes | 0.4799 |
| Parabacteroides distasonis | Parabacteroides | 0.4596 |
| Phocaeicola plebeius | Phocaeicola | 0.4439 |
| Dialister propionicifaciens | Dialister | 0.4357 |
| Prevotella veroralis | Prevotella | 0.4020 |
| Phocaeicola coprocola | Phocaeicola | 0.3284 |
| Prevotella oulorum | Prevotella | 0.3030 |
| Prevotella melaninogenica | Prevotella | 0.2903 |
| Blautia faecis | Blautia | 0.2560 |
| Dysosmobacter welbionis | Dysosmobacter | 0.2273 |
| Anaerotignum faecicola | Anaerotignum | 0.2238 |
| Dorea longicatena | Dorea | 0.2021 |
| Blautia luti | Blautia | 0.1984 |
| Blautia wexlerae | Blautia | 0.1642 |
| Phocaeicola dorei | Phocaeicola | 0.1368 |
| Phocaeicola sartorii | Phocaeicola | 0.1360 |
| Parabacteroides merdae | Parabacteroides | 0.1341 |
| Streptococcus thermophilus | Streptococcus | 0.0884 |
Saved public metadata
{
"run_accession": "ERR16795834",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950416",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "64770",
"base_count": "96178585",
"fastq_bytes": "82066603",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/034/ERR16795834/ERR16795834.fastq.gz",
"sample_title": "TBAGUMPS_035b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "49fb9004fc26b852233660efa6f8271af3ea2da9548dfe9ef921d2b885331d5b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1492.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4027,
"elapsed_seconds": 2.0291436679999606,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 18,
"fraction": 0.09,
"adapters_found": {
"27F": 9,
"BC_FLANK": 9
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}