ERR16795833 · Gut microbiome
TBAGUMPS_035a_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 40.9520 |
| Blautia producta | Blautia | 8.0183 |
| Agathobacter ruminis | Agathobacter | 7.5358 |
| Blautia glucerasea | Blautia | 6.6186 |
| Prevotella copri | Prevotella | 5.8413 |
| Dialister invisus | Dialister | 4.5991 |
| Eubacterium oxidoreducens | Eubacterium | 3.9301 |
| Mitsuokella jalaludinii | Mitsuokella | 3.1348 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.2777 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.7341 |
| Dorea formicigenerans | Dorea | 1.6354 |
| Prevotella jejuni | Prevotella | 1.1856 |
| Anaerostipes hadrus | Anaerostipes | 1.1308 |
| Eubacterium ruminantium | Eubacterium | 0.9829 |
| Klebsiella pneumoniae | Klebsiella | 0.8625 |
| Blautia hansenii | Blautia | 0.8434 |
| Dialister hominis | Dialister | 0.8209 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.6915 |
| Eubacterium ventriosum | Eubacterium | 0.6695 |
| Agathobaculum desmolans | Agathobaculum | 0.6171 |
| Eshraghiella crossota | Eshraghiella | 0.5889 |
| Flavonifractor plautii | Flavonifractor | 0.5725 |
| Phocaeicola plebeius | Phocaeicola | 0.5725 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.4878 |
| Phocaeicola vulgatus | Phocaeicola | 0.4610 |
| Eubacterium limosum | Eubacterium | 0.4542 |
| Dialister propionicifaciens | Dialister | 0.3792 |
| Anaerotignum lactatifermentans | Anaerotignum | 0.3717 |
| Blautia faecis | Blautia | 0.3641 |
| Mitsuokella multacida | Mitsuokella | 0.3451 |
| Blautia marasmi | Blautia | 0.2601 |
| Blautia luti | Blautia | 0.2520 |
| Prevotella melaninogenica | Prevotella | 0.2297 |
| Dorea longicatena | Dorea | 0.2008 |
| Anaerotignum faecicola | Anaerotignum | 0.2007 |
| Prevotella nigrescens | Prevotella | 0.1784 |
Saved public metadata
{
"run_accession": "ERR16795833",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950415",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "68035",
"base_count": "100409547",
"fastq_bytes": "88560681",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/033/ERR16795833/ERR16795833.fastq.gz",
"sample_title": "TBAGUMPS_035a_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "672ab624f69dfcaafc9e208a14f7b1e146bdf10d518b25aa46950b83a3fcefee",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1489.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6356,
"elapsed_seconds": 2.166080054999952,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 12,
"fraction": 0.06,
"adapters_found": {
"BC_FLANK": 9,
"27F": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}