ERR16795829 · Gut microbiome
TBAGUMPS_034a_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 28.5095 |
| Hominimerdicola aceti | Hominimerdicola | 13.9836 |
| Anaerobutyricum hallii | Anaerobutyricum | 7.0975 |
| Blautia producta | Blautia | 6.8765 |
| Blautia glucerasea | Blautia | 6.1487 |
| Romboutsia timonensis | Romboutsia | 5.3552 |
| Anaerostipes hadrus | Anaerostipes | 5.2748 |
| Ruminococcus champanellensis | Ruminococcus | 5.1314 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 3.0189 |
| Streptococcus salivarius | Streptococcus | 2.2839 |
| Ruminococcus bromii | Ruminococcus | 1.6075 |
| Coprococcus eutactus | Coprococcus | 1.5017 |
| Ruminococcus callidus | Ruminococcus | 1.4216 |
| Blautia hansenii | Blautia | 1.2415 |
| Anaerostipes butyraticus | Anaerostipes | 1.0993 |
| Hominimerdicola alba | Hominimerdicola | 1.0864 |
| Bifidobacterium adolescentis | Bifidobacterium | 1.0604 |
| Romboutsia lituseburensis | Romboutsia | 0.9498 |
| Romboutsia sedimentorum | Romboutsia | 0.9415 |
| Gemmiger formicilis | Gemmiger | 0.6969 |
| Akkermansia muciniphila | Akkermansia | 0.6880 |
| Dorea formicigenerans | Dorea | 0.5452 |
| Blautia luti | Blautia | 0.5340 |
| Floricoccus tropicus | Floricoccus | 0.4679 |
| Ruminococcus flavefaciens | Ruminococcus | 0.4636 |
| Subdoligranulum variabile | Subdoligranulum | 0.4252 |
| Agathobacter ruminis | Agathobacter | 0.3359 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.3056 |
| Bifidobacterium longum | Bifidobacterium | 0.2707 |
| Streptococcus thermophilus | Streptococcus | 0.2662 |
| Anaerostipes rhamnosivorans | Anaerostipes | 0.2192 |
| Blautia faecis | Blautia | 0.1923 |
Saved public metadata
{
"run_accession": "ERR16795829",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950411",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "62376",
"base_count": "91733132",
"fastq_bytes": "82141156",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/029/ERR16795829/ERR16795829.fastq.gz",
"sample_title": "TBAGUMPS_034a_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d3faeb5b67d63610261728d4182d8631fd1235f2e2f5b4cf000f6263d894e67d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6520,
"elapsed_seconds": 2.422315540999989,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 6,
"fraction": 0.03,
"adapters_found": {
"27F": 3,
"BC_FLANK": 3
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}