ERR16795828 · Gut microbiome
TBAGUMPS_029b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Anaerobutyricum hallii | Anaerobutyricum | 15.3283 |
| Akkermansia muciniphila | Akkermansia | 11.2235 |
| Ruminococcus champanellensis | Ruminococcus | 10.6148 |
| Ruminococcus callidus | Ruminococcus | 9.0417 |
| Romboutsia timonensis | Romboutsia | 8.9983 |
| Blautia glucerasea | Blautia | 8.6367 |
| Gemmiger formicilis | Gemmiger | 5.1596 |
| Bifidobacterium adolescentis | Bifidobacterium | 5.1081 |
| Clostridium saudiense | Clostridium | 4.3760 |
| Blautia producta | Blautia | 3.4612 |
| Subdoligranulum variabile | Subdoligranulum | 2.9756 |
| Clostridium isatidis | Clostridium | 1.9305 |
| Ruminococcus flavefaciens | Ruminococcus | 1.5228 |
| Romboutsia sedimentorum | Romboutsia | 1.2353 |
| Clostridium phytofermentans | Clostridium | 1.2238 |
| Bifidobacterium longum | Bifidobacterium | 1.1451 |
| Ruminococcus bromii | Ruminococcus | 1.1008 |
| Romboutsia lituseburensis | Romboutsia | 1.0191 |
| Christensenella massiliensis | Christensenella | 0.9085 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 0.5919 |
| Blautia hansenii | Blautia | 0.4223 |
| Christensenella minuta | Christensenella | 0.3975 |
| Intestinibacter bartlettii | Intestinibacter | 0.3682 |
| Clostridium beijerinckii | Clostridium | 0.3387 |
| Bifidobacterium bifidum | Bifidobacterium | 0.3213 |
| Clostridium botulinum | Clostridium | 0.2530 |
| Clostridium merdae | Clostridium | 0.2508 |
| Latilactobacillus sakei | Latilactobacillus | 0.2435 |
| Clostridium septicum | Clostridium | 0.2432 |
| Akkermansia glycaniphila | Akkermansia | 0.2377 |
| Streptococcus mutans | Streptococcus | 0.2369 |
| Blautia luti | Blautia | 0.2368 |
| Gardnerella vaginalis | Gardnerella | 0.2236 |
| Coprococcus eutactus | Coprococcus | 0.1992 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.1715 |
| Christensenella timonensis | Christensenella | 0.1617 |
| Weissella cibaria | Weissella | 0.0921 |
Saved public metadata
{
"run_accession": "ERR16795828",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950410",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "188616",
"base_count": "278087411",
"fastq_bytes": "235897474",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/028/ERR16795828/ERR16795828.fastq.gz",
"sample_title": "TBAGUMPS_029b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1d843d7a4890928a74e3b9065ddfcc874b5c9215d94d5b510898c6e356606508",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1485.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4671,
"elapsed_seconds": 2.105507259999996,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 20,
"fraction": 0.1,
"adapters_found": {
"BC_FLANK": 13,
"27F": 5,
"RAP": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}