ERR16795826 · Gut microbiome
TBAGUMPS_027b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 45.9702 |
| Blautia producta | Blautia | 7.0300 |
| Blautia glucerasea | Blautia | 5.7300 |
| Bacteroides gallinaceus | Bacteroides | 4.8418 |
| Roseburia hominis | Roseburia | 4.6720 |
| Agathobaculum desmolans | Agathobaculum | 3.1986 |
| Lutispora thermophila | Lutispora | 2.6618 |
| Lachnospira eligens | Lachnospira | 2.5404 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.0402 |
| Anaplasma phagocytophilum | Anaplasma | 1.7191 |
| Ruminococcus champanellensis | Ruminococcus | 1.6204 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.5869 |
| Phocaeicola dorei | Phocaeicola | 1.5259 |
| Akkermansia muciniphila | Akkermansia | 1.5259 |
| Gemmiger formicilis | Gemmiger | 1.2741 |
| Roseburia intestinalis | Roseburia | 1.1515 |
| Subdoligranulum variabile | Subdoligranulum | 0.8502 |
| Ruminococcus callidus | Ruminococcus | 0.7949 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.7691 |
| Blautia hansenii | Blautia | 0.7148 |
| Anaplasma marginale | Anaplasma | 0.6432 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.5988 |
| Bacteroides xylanisolvens | Bacteroides | 0.5546 |
| Barnesiella viscericola | Barnesiella | 0.5383 |
| Blautia faecis | Blautia | 0.5029 |
| Phocaeicola vulgatus | Phocaeicola | 0.4517 |
| Turicibacter sanguinis | Turicibacter | 0.4150 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4149 |
| Phocaeicola salanitronis | Phocaeicola | 0.4126 |
| Bacteroides ovatus | Bacteroides | 0.3939 |
| Bacteroides uniformis | Bacteroides | 0.3841 |
| Ruminococcus bromii | Ruminococcus | 0.3430 |
| Blautia luti | Blautia | 0.3296 |
| Ehrlichia muris | Ehrlichia | 0.3052 |
| Agathobaculum butyriciproducens | Agathobaculum | 0.2803 |
| Lachnospira multipara | Lachnospira | 0.2767 |
| Bacteroides eggerthii | Bacteroides | 0.2723 |
| Phocaeicola massiliensis | Phocaeicola | 0.2563 |
| Caulobacter vibrioides | Caulobacter | 0.2134 |
| Mahella australiensis | Mahella | 0.1953 |
Saved public metadata
{
"run_accession": "ERR16795826",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950408",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "153774",
"base_count": "222472631",
"fastq_bytes": "193574186",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/026/ERR16795826/ERR16795826.fastq.gz",
"sample_title": "TBAGUMPS_027b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3d2b1d3fd4a1291d74268ed5ff8f6233711c94c228126e93a85674da705f500f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 11712,
"elapsed_seconds": 1.5235126860000037,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 9,
"fraction": 0.045,
"adapters_found": {
"BC_FLANK": 5,
"27F": 4
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}