ERR16795821 · Gut microbiome
TBAGUMPS_024b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 27.4903 |
| Ruminococcus champanellensis | Ruminococcus | 13.3938 |
| Blautia glucerasea | Blautia | 4.7600 |
| Acidaminococcus intestini | Acidaminococcus | 4.6703 |
| Ruminococcus callidus | Ruminococcus | 4.1857 |
| Phocaeicola vulgatus | Phocaeicola | 4.0579 |
| Akkermansia muciniphila | Akkermansia | 3.9500 |
| Blautia producta | Blautia | 3.8017 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.1565 |
| Acidaminococcus fermentans | Acidaminococcus | 2.5247 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.4063 |
| Alistipes onderdonkii | Alistipes | 1.9221 |
| Mahella australiensis | Mahella | 1.8604 |
| Subdoligranulum variabile | Subdoligranulum | 1.6315 |
| Pedobacter kyungheensis | Pedobacter | 1.3730 |
| Blautia faecis | Blautia | 1.3698 |
| Phocaeicola coprocola | Phocaeicola | 1.3362 |
| Eubacterium limosum | Eubacterium | 1.2339 |
| Ruminococcus flavefaciens | Ruminococcus | 1.1981 |
| Ruminococcus bromii | Ruminococcus | 1.1018 |
| Lachnospira eligens | Lachnospira | 1.0586 |
| Phocaeicola sartorii | Phocaeicola | 1.0410 |
| Eubacterium oxidoreducens | Eubacterium | 1.0054 |
| Anaerostipes hadrus | Anaerostipes | 0.9486 |
| Pedobacter hainanensis | Pedobacter | 0.8662 |
| Alistipes putredinis | Alistipes | 0.7709 |
| Negativibacillus massiliensis | Negativibacillus | 0.7599 |
| Anaerostipes butyraticus | Anaerostipes | 0.7276 |
| Parabacteroides merdae | Parabacteroides | 0.6064 |
| Rhodopirellula rubra | Rhodopirellula | 0.5473 |
| Romboutsia timonensis | Romboutsia | 0.5036 |
| Blautia hansenii | Blautia | 0.4918 |
| Eubacterium ruminantium | Eubacterium | 0.4865 |
| Dorea formicigenerans | Dorea | 0.4625 |
| Parabacteroides distasonis | Parabacteroides | 0.3597 |
| Alistipes inops | Alistipes | 0.3488 |
| Phocaeicola massiliensis | Phocaeicola | 0.2878 |
| Dorea longicatena | Dorea | 0.2776 |
| Pedobacter nototheniae | Pedobacter | 0.2772 |
| Bifidobacterium animalis | Bifidobacterium | 0.2570 |
| Lactobacillus psittaci | Lactobacillus | 0.2467 |
| Akkermansia glycaniphila | Akkermansia | 0.2450 |
Saved public metadata
{
"run_accession": "ERR16795821",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950403",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "244622",
"base_count": "344032854",
"fastq_bytes": "302603884",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/021/ERR16795821/ERR16795821.fastq.gz",
"sample_title": "TBAGUMPS_024b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "21222b440ccf7acd8d60997aa969f527cf2055665df0b07da51f927b3934da9b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1493.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10145,
"elapsed_seconds": 1.4837358130000666,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 61,
"fraction": 0.305,
"adapters_found": {
"RAP": 14,
"BC_FLANK": 40,
"27F": 7
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}