ERR16795818 · Gut microbiome
TBAGUMPS_023b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 26.0080 |
| Blautia glucerasea | Blautia | 14.6158 |
| Roseburia hominis | Roseburia | 10.2057 |
| Blautia producta | Blautia | 9.3153 |
| Roseburia intestinalis | Roseburia | 7.1010 |
| Anaerostipes hadrus | Anaerostipes | 5.2243 |
| Lachnospira eligens | Lachnospira | 3.6273 |
| Dorea formicigenerans | Dorea | 2.8957 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.6951 |
| Blautia faecis | Blautia | 2.0899 |
| Hominimerdicola aceti | Hominimerdicola | 1.6617 |
| Prevotella denticola | Prevotella | 1.5511 |
| Blautia hansenii | Blautia | 1.1688 |
| Phocaeicola vulgatus | Phocaeicola | 1.1434 |
| Ruminococcus champanellensis | Ruminococcus | 0.9405 |
| Gemmiger formicilis | Gemmiger | 0.8402 |
| Ruminococcus callidus | Ruminococcus | 0.7562 |
| Prevotella fusca | Prevotella | 0.6798 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.6703 |
| Subdoligranulum variabile | Subdoligranulum | 0.6120 |
| Ruminococcus bromii | Ruminococcus | 0.5530 |
| Prevotella oris | Prevotella | 0.5300 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.4991 |
| Phocaeicola dorei | Phocaeicola | 0.4974 |
| Dorea longicatena | Dorea | 0.4860 |
| Blautia luti | Blautia | 0.4472 |
| Roseburia faecis | Roseburia | 0.4075 |
| Lachnospira multipara | Lachnospira | 0.3794 |
| Agathobaculum desmolans | Agathobaculum | 0.3732 |
| Roseburia inulinivorans | Roseburia | 0.3016 |
| Anaerostipes butyraticus | Anaerostipes | 0.2955 |
| Bifidobacterium longum | Bifidobacterium | 0.2188 |
| Prevotella nigrescens | Prevotella | 0.2059 |
| Blautia marasmi | Blautia | 0.1984 |
| Coprococcus eutactus | Coprococcus | 0.1906 |
| Prevotella copri | Prevotella | 0.1862 |
| Blautia wexlerae | Blautia | 0.1655 |
| Bifidobacterium catenulatum | Bifidobacterium | 0.1339 |
| Streptococcus thermophilus | Streptococcus | 0.1287 |
Saved public metadata
{
"run_accession": "ERR16795818",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950400",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "204186",
"base_count": "309967589",
"fastq_bytes": "263922967",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/018/ERR16795818/ERR16795818.fastq.gz",
"sample_title": "TBAGUMPS_023b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "32d4ad6118a0c5448e76f7a736a209433c491c2134898b8f66d8830ce6166ac5",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1490.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4371,
"elapsed_seconds": 2.48213129699991,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 16,
"fraction": 0.08,
"adapters_found": {
"27F": 5,
"RAP": 2,
"BC_FLANK": 9
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}