ERR16795817 · Gut microbiome
TBAGUMPS_023a_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 43.4333 |
| Hominimerdicola aceti | Hominimerdicola | 9.8161 |
| Blautia glucerasea | Blautia | 7.4514 |
| Lachnospira eligens | Lachnospira | 6.7705 |
| Phocaeicola vulgatus | Phocaeicola | 6.4151 |
| Blautia producta | Blautia | 5.7043 |
| Roseburia hominis | Roseburia | 3.0363 |
| Streptococcus thermophilus | Streptococcus | 2.4440 |
| Roseburia intestinalis | Roseburia | 2.0850 |
| Ruminococcus champanellensis | Ruminococcus | 1.9005 |
| Roseburia inulinivorans | Roseburia | 1.0727 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.7632 |
| Subdoligranulum variabile | Subdoligranulum | 0.7087 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.6818 |
| Dorea formicigenerans | Dorea | 0.6482 |
| Anaerostipes hadrus | Anaerostipes | 0.6433 |
| Bacteroides fragilis | Bacteroides | 0.5537 |
| Bacteroides uniformis | Bacteroides | 0.5405 |
| Phocaeicola dorei | Phocaeicola | 0.4972 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.4589 |
| Blautia hansenii | Blautia | 0.4395 |
| Streptococcus salivarius | Streptococcus | 0.4392 |
| Alistipes onderdonkii | Alistipes | 0.4321 |
| Blautia faecis | Blautia | 0.3962 |
| Hominimerdicola alba | Hominimerdicola | 0.3381 |
| Ruminococcus bromii | Ruminococcus | 0.3270 |
| Blautia luti | Blautia | 0.3182 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.3174 |
| Eubacterium oxidoreducens | Eubacterium | 0.3110 |
| Ruminococcus callidus | Ruminococcus | 0.2996 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.2224 |
| Bacteroides clarus | Bacteroides | 0.2113 |
| Roseburia faecis | Roseburia | 0.1681 |
| Hallella seregens | Hallella | 0.1553 |
Saved public metadata
{
"run_accession": "ERR16795817",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950399",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "104231",
"base_count": "153438035",
"fastq_bytes": "130146718",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/017/ERR16795817/ERR16795817.fastq.gz",
"sample_title": "TBAGUMPS_023a_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "8fb03fdec1e55c6b92d8fb60a83d44c620a282533f0a74a8f9fd6be5529766f5",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5008,
"elapsed_seconds": 1.7721073909999916,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 16,
"fraction": 0.08,
"adapters_found": {
"27F": 7,
"BC_FLANK": 9
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}