ERR16795813 · Gut microbiome
TBAGUMPS_022a_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Romboutsia timonensis | Romboutsia | 23.2631 |
| Anaerobutyricum hallii | Anaerobutyricum | 13.8644 |
| Bifidobacterium adolescentis | Bifidobacterium | 8.2866 |
| Anaerostipes hadrus | Anaerostipes | 5.1959 |
| Gemmiger formicilis | Gemmiger | 5.0948 |
| Bifidobacterium longum | Bifidobacterium | 4.2488 |
| Akkermansia muciniphila | Akkermansia | 4.0698 |
| Dialister hominis | Dialister | 3.9751 |
| Bifidobacterium angulatum | Bifidobacterium | 3.7975 |
| Blautia glucerasea | Blautia | 3.7186 |
| Subdoligranulum variabile | Subdoligranulum | 3.5856 |
| Romboutsia sedimentorum | Romboutsia | 3.1914 |
| Ruminococcus champanellensis | Ruminococcus | 2.2940 |
| Dorea formicigenerans | Dorea | 2.2445 |
| Ruminococcus callidus | Ruminococcus | 2.1937 |
| Blautia producta | Blautia | 1.9742 |
| Bifidobacterium bifidum | Bifidobacterium | 1.8522 |
| Anaerostipes butyraticus | Anaerostipes | 0.8945 |
| Romboutsia lituseburensis | Romboutsia | 0.7224 |
| Escherichia coli | Escherichia | 0.6963 |
| Lachnospira eligens | Lachnospira | 0.6284 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.5746 |
| Ruminococcus bromii | Ruminococcus | 0.5562 |
| Dialister propionicifaciens | Dialister | 0.5003 |
| Bifidobacterium catenulatum | Bifidobacterium | 0.4804 |
| Dorea longicatena | Dorea | 0.3960 |
| Blautia faecis | Blautia | 0.3718 |
| Dialister succinatiphilus | Dialister | 0.3313 |
| Lactobacillus gasseri | Lactobacillus | 0.3177 |
| Allocoprococcus comes | Allocoprococcus | 0.2704 |
| Ruminococcus flavefaciens | Ruminococcus | 0.2580 |
| Blautia hansenii | Blautia | 0.1515 |
Saved public metadata
{
"run_accession": "ERR16795813",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950395",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "101263",
"base_count": "149893810",
"fastq_bytes": "113190787",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/013/ERR16795813/ERR16795813.fastq.gz",
"sample_title": "TBAGUMPS_022a_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "90d0c70595442b59647d26e8522c5af80cc3bb0b360ccdc29fc55f2223cecbdf",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1487.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5131,
"elapsed_seconds": 2.06871993499999,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 35,
"fraction": 0.175,
"adapters_found": {
"BC_FLANK": 32,
"27F": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}