ERR16795810 · Gut microbiome
TBAGUMPS_021b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 33.0118 |
| Blautia glucerasea | Blautia | 8.8044 |
| Romboutsia timonensis | Romboutsia | 7.8411 |
| Dorea formicigenerans | Dorea | 5.2773 |
| Anaerostipes hadrus | Anaerostipes | 4.6103 |
| Blautia producta | Blautia | 4.0437 |
| Romboutsia sedimentorum | Romboutsia | 3.3930 |
| Ruminococcus champanellensis | Ruminococcus | 3.3901 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.2410 |
| Subdoligranulum variabile | Subdoligranulum | 2.6166 |
| Terrisporobacter mayombei | Terrisporobacter | 2.4496 |
| Bifidobacterium longum | Bifidobacterium | 2.3619 |
| Ruminococcus callidus | Ruminococcus | 2.2872 |
| Romboutsia lituseburensis | Romboutsia | 2.1501 |
| Gemmiger formicilis | Gemmiger | 2.0903 |
| Blautia faecis | Blautia | 1.6874 |
| Ruminococcus bromii | Ruminococcus | 1.3363 |
| Dorea longicatena | Dorea | 1.0553 |
| Dialister invisus | Dialister | 1.0435 |
| Blautia hansenii | Blautia | 0.7741 |
| Pedobacter kyungheensis | Pedobacter | 0.7125 |
| Intestinibacter bartlettii | Intestinibacter | 0.5596 |
| Agathobacter ruminis | Agathobacter | 0.5589 |
| Terrisporobacter petrolearius | Terrisporobacter | 0.5260 |
| Pedobacter hainanensis | Pedobacter | 0.5180 |
| Anaerostipes butyraticus | Anaerostipes | 0.4429 |
| Ruminococcus flavefaciens | Ruminococcus | 0.4284 |
| Blautia luti | Blautia | 0.4253 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.4111 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.3129 |
| Bifidobacterium bifidum | Bifidobacterium | 0.2982 |
| Gardnerella vaginalis | Gardnerella | 0.2758 |
| Floricoccus tropicus | Floricoccus | 0.2670 |
| Floricoccus penangensis | Floricoccus | 0.2625 |
| Rhodopirellula rubra | Rhodopirellula | 0.2318 |
| Pedobacter nototheniae | Pedobacter | 0.1551 |
| Ruminococcus gauvreauii | Ruminococcus | 0.1491 |
Saved public metadata
{
"run_accession": "ERR16795810",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950392",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "154371",
"base_count": "219017668",
"fastq_bytes": "184732969",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/010/ERR16795810/ERR16795810.fastq.gz",
"sample_title": "TBAGUMPS_021b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "581e3d1bf7b6546b5ce112d01f36a980c2fc0fff09dced6a19c069eae3b1d8d3",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6533,
"elapsed_seconds": 1.8701183460000266,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 42,
"fraction": 0.21,
"adapters_found": {
"27F": 12,
"BC_FLANK": 23,
"RAP": 7
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}