ERR16795809 · Gut microbiome
TBAGUMPS_021a_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 40.4537 |
| Hominimerdicola aceti | Hominimerdicola | 8.8292 |
| Roseburia hominis | Roseburia | 8.2857 |
| Lachnospira eligens | Lachnospira | 4.9555 |
| Dialister invisus | Dialister | 4.8056 |
| Blautia glucerasea | Blautia | 4.7330 |
| Blautia producta | Blautia | 4.2737 |
| Ruminococcus champanellensis | Ruminococcus | 2.8932 |
| Roseburia intestinalis | Roseburia | 2.2854 |
| Romboutsia timonensis | Romboutsia | 2.1756 |
| Faecalicatena fissicatena | Faecalicatena | 2.0844 |
| Phocaeicola dorei | Phocaeicola | 1.6635 |
| Roseburia inulinivorans | Roseburia | 1.2705 |
| Eubacterium oxidoreducens | Eubacterium | 0.9299 |
| Blautia hansenii | Blautia | 0.8654 |
| Subdoligranulum variabile | Subdoligranulum | 0.7565 |
| Phocaeicola vulgatus | Phocaeicola | 0.7502 |
| Anaplasma phagocytophilum | Anaplasma | 0.7233 |
| Hominimerdicola alba | Hominimerdicola | 0.7227 |
| Ruminococcus callidus | Ruminococcus | 0.6127 |
| Eubacterium ventriosum | Eubacterium | 0.5895 |
| Faecalicatena orotica | Faecalicatena | 0.5494 |
| Anaplasma marginale | Anaplasma | 0.4673 |
| Ruminococcus bromii | Ruminococcus | 0.4655 |
| Faecalicatena contorta | Faecalicatena | 0.4651 |
| Eubacterium ruminantium | Eubacterium | 0.4576 |
| Dialister hominis | Dialister | 0.3681 |
| Dorea formicigenerans | Dorea | 0.3680 |
| Eubacterium limosum | Eubacterium | 0.3359 |
| Blautia faecis | Blautia | 0.3031 |
| Eshraghiella crossota | Eshraghiella | 0.2920 |
| Parabacteroides distasonis | Parabacteroides | 0.2814 |
| Agathobaculum desmolans | Agathobaculum | 0.2706 |
| Roseburia faecis | Roseburia | 0.2624 |
| Parabacteroides merdae | Parabacteroides | 0.2273 |
| Streptococcus salivarius | Streptococcus | 0.2273 |
Saved public metadata
{
"run_accession": "ERR16795809",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950391",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "536963",
"base_count": "790047492",
"fastq_bytes": "679773431",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/009/ERR16795809/ERR16795809.fastq.gz",
"sample_title": "TBAGUMPS_021a_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f908f284ddc049a108d73a69028f3223d88e183f9f5cba41a74e1b24ea7e01a9",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10640,
"elapsed_seconds": 1.4363158789999986,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 12,
"fraction": 0.06,
"adapters_found": {
"27F": 6,
"BC_FLANK": 6
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}