ERR16795808 · Gut microbiome
TBAGUMPS_020b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 19.3652 |
| Gemmiger formicilis | Gemmiger | 19.2661 |
| Anaerobutyricum hallii | Anaerobutyricum | 10.2378 |
| Anaerostipes hadrus | Anaerostipes | 9.3360 |
| Subdoligranulum variabile | Subdoligranulum | 7.4052 |
| Romboutsia timonensis | Romboutsia | 4.9912 |
| Blautia producta | Blautia | 4.9406 |
| Clostridium saudiense | Clostridium | 2.4102 |
| Hominimerdicola aceti | Hominimerdicola | 1.8924 |
| Clostridium phytofermentans | Clostridium | 1.7438 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 1.7172 |
| Blautia faecis | Blautia | 1.5068 |
| Ruminococcus champanellensis | Ruminococcus | 1.2083 |
| Turicibacter sanguinis | Turicibacter | 1.0989 |
| Eubacterium oxidoreducens | Eubacterium | 1.0948 |
| Pedobacter kyungheensis | Pedobacter | 1.0330 |
| Clostridium isatidis | Clostridium | 0.9938 |
| Streptococcus thermophilus | Streptococcus | 0.7994 |
| Eubacterium ventriosum | Eubacterium | 0.7566 |
| Akkermansia muciniphila | Akkermansia | 0.6366 |
| Blautia hansenii | Blautia | 0.6313 |
| Streptococcus salivarius | Streptococcus | 0.5944 |
| Pedobacter hainanensis | Pedobacter | 0.5882 |
| Clostridium botulinum | Clostridium | 0.5698 |
| Ihubacter massiliensis | Ihubacter | 0.5627 |
| Romboutsia sedimentorum | Romboutsia | 0.4194 |
| Romboutsia lituseburensis | Romboutsia | 0.4189 |
| Ruminococcus callidus | Ruminococcus | 0.3901 |
| Eubacterium ruminantium | Eubacterium | 0.3461 |
| Eubacterium limosum | Eubacterium | 0.3316 |
| Lactococcus lactis | Lactococcus | 0.3082 |
| Blautia luti | Blautia | 0.2681 |
| Anaerostipes butyraticus | Anaerostipes | 0.2680 |
| Clostridium beijerinckii | Clostridium | 0.2501 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.2345 |
| Rhodopirellula rubra | Rhodopirellula | 0.2298 |
| Ruminococcus bromii | Ruminococcus | 0.2227 |
| Dorea formicigenerans | Dorea | 0.2154 |
| Blautia wexlerae | Blautia | 0.2135 |
| Hominimerdicola alba | Hominimerdicola | 0.1905 |
| Clostridium tertium | Clostridium | 0.1739 |
| Eubacterium uniforme | Eubacterium | 0.1390 |
Saved public metadata
{
"run_accession": "ERR16795808",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950390",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "127138",
"base_count": "175085205",
"fastq_bytes": "147986232",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/008/ERR16795808/ERR16795808.fastq.gz",
"sample_title": "TBAGUMPS_020b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "2c3ca527b898b6c6f24d47c516f5a6cc32c2ae747c7bfb96cd3b0aedf98c9e8a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1487.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4919,
"elapsed_seconds": 2.044105558999945,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 32,
"fraction": 0.16,
"adapters_found": {
"RAP": 16,
"BC_FLANK": 9,
"27F": 7
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}