ERR16795796 · Gut microbiome
TBAGUMPS_015b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 27.4165 |
| Pedobacter kyungheensis | Pedobacter | 9.6234 |
| Lachnospira eligens | Lachnospira | 8.8216 |
| Blautia producta | Blautia | 6.3054 |
| Pedobacter hainanensis | Pedobacter | 6.2536 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 5.9324 |
| Blautia glucerasea | Blautia | 5.2039 |
| Terrimonas rhizosphaerae | Terrimonas | 2.8215 |
| Blautia faecis | Blautia | 2.7182 |
| Pedobacter nototheniae | Pedobacter | 2.5241 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.2500 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.1659 |
| Anaerostipes hadrus | Anaerostipes | 2.0001 |
| Phocaeicola vulgatus | Phocaeicola | 1.4306 |
| Phocaeicola massiliensis | Phocaeicola | 1.2247 |
| Rhodopirellula rubra | Rhodopirellula | 1.1391 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.1165 |
| Anaerostipes butyraticus | Anaerostipes | 1.0323 |
| Lachnospira pectinoschiza | Lachnospira | 0.9906 |
| Allocoprococcus comes | Allocoprococcus | 0.9338 |
| Blautia hansenii | Blautia | 0.9278 |
| Agathobacter ruminis | Agathobacter | 0.8913 |
| Hominimerdicola aceti | Hominimerdicola | 0.8513 |
| Pedobacter roseus | Pedobacter | 0.8300 |
| Dorea longicatena | Dorea | 0.6933 |
| Phocaeicola sartorii | Phocaeicola | 0.6370 |
| Blautia luti | Blautia | 0.5507 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.5093 |
| Floricoccus tropicus | Floricoccus | 0.4952 |
| Pedobacter glacialis | Pedobacter | 0.4825 |
| Dorea formicigenerans | Dorea | 0.3962 |
| Hominimerdicola alba | Hominimerdicola | 0.3644 |
| Hallella seregens | Hallella | 0.2547 |
| Parabacteroides distasonis | Parabacteroides | 0.2123 |
Saved public metadata
{
"run_accession": "ERR16795796",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950378",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "127226",
"base_count": "112089224",
"fastq_bytes": "97701456",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/096/ERR16795796/ERR16795796.fastq.gz",
"sample_title": "TBAGUMPS_015b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "427c65fb1cba78c28205dbe8f388ee816347720e9453aa57bb7398d18eb8b4f6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 438.5,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12900,
"elapsed_seconds": 1.8487669290000213,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 69,
"fraction": 0.345,
"adapters_found": {
"BC_FLANK": 23,
"RAP": 40,
"27F": 6
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}