ERR16795789 · Gut microbiome

TBAGUMPS_011b_16s

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Faecalibacterium prausnitzii	Faecalibacterium	25.9960
Streptococcus thermophilus	Streptococcus	23.4037
Blautia producta	Blautia	6.0176
Blautia glucerasea	Blautia	3.7662
Roseburia hominis	Roseburia	3.5351
Ruminococcus champanellensis	Ruminococcus	3.2984
Anaerostipes hadrus	Anaerostipes	3.0430
Streptococcus salivarius	Streptococcus	2.6439
Ruminococcus callidus	Ruminococcus	2.5190
Anaerobutyricum hallii	Anaerobutyricum	2.2807
Romboutsia timonensis	Romboutsia	2.0248
Subdoligranulum variabile	Subdoligranulum	1.9026
Blautia faecis	Blautia	1.5260
Pedobacter hainanensis	Pedobacter	1.5031
Pedobacter kyungheensis	Pedobacter	1.4781
Roseburia intestinalis	Roseburia	1.3278
Ruminococcus bromii	Ruminococcus	1.0722
Eubacterium limosum	Eubacterium	0.8370
Streptococcus downei	Streptococcus	0.8124
Coprococcus eutactus	Coprococcus	0.7364
Floricoccus tropicus	Floricoccus	0.7171
Fusicatenibacter saccharivorans	Fusicatenibacter	0.7102
Eubacterium oxidoreducens	Eubacterium	0.6854
Blautia hansenii	Blautia	0.6764
Pedobacter nototheniae	Pedobacter	0.6643
Tissierella praeacuta	Tissierella	0.6525
Dorea formicigenerans	Dorea	0.5854
Streptococcus mitis	Streptococcus	0.4900
Streptococcus intermedius	Streptococcus	0.4809
Anaerostipes butyraticus	Anaerostipes	0.4787
Bacteroides uniformis	Bacteroides	0.4418
Ruminococcus flavefaciens	Ruminococcus	0.4410
Streptococcus vestibularis	Streptococcus	0.4295
Eubacterium ruminantium	Eubacterium	0.3965
Romboutsia sedimentorum	Romboutsia	0.3952
Bacteroides fragilis	Bacteroides	0.3169
Pedobacter jejuensis	Pedobacter	0.3168
Dorea longicatena	Dorea	0.2536
Bifidobacterium longum	Bifidobacterium	0.2495
Eubacterium pyruvativorans	Eubacterium	0.2399
Romboutsia lituseburensis	Romboutsia	0.2381
Roseburia faecis	Roseburia	0.2146
Allocoprococcus comes	Allocoprococcus	0.2015

Saved public metadata

{
  "run_accession": "ERR16795789",
  "study_accession": "PRJEB109268",
  "sample_accession": "SAMEA121950371",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "PCR",
  "read_count": "44866",
  "base_count": "56944008",
  "fastq_bytes": "49435403",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/089/ERR16795789/ERR16795789.fastq.gz",
  "sample_title": "TBAGUMPS_011b_16s",
  "scientific_name": "gut metagenome"
}

Public files

ERR16795789.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "e2974bdd3cfe275fb5a6673738fb14491dba2e55882e41a02afe0955796e66dc",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1491.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 9439,
    "elapsed_seconds": 1.75946083000008,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 39,
      "fraction": 0.195,
      "adapters_found": {
        "27F": 6,
        "RAP": 16,
        "BC_FLANK": 17
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}