ERR16795787 · Gut microbiome
TBAGUMPS_009b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 22.6751 |
| Pedobacter kyungheensis | Pedobacter | 8.2490 |
| Pedobacter hainanensis | Pedobacter | 5.7724 |
| Lachnospira eligens | Lachnospira | 5.2071 |
| Anaerostipes hadrus | Anaerostipes | 5.1743 |
| Roseburia hominis | Roseburia | 4.7148 |
| Blautia glucerasea | Blautia | 4.2055 |
| Prevotella copri | Prevotella | 4.0830 |
| Blautia producta | Blautia | 4.0669 |
| Roseburia intestinalis | Roseburia | 3.9833 |
| Pedobacter nototheniae | Pedobacter | 2.9094 |
| Blautia faecis | Blautia | 2.5732 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.3083 |
| Pedobacter roseus | Pedobacter | 2.2715 |
| Ruminococcus champanellensis | Ruminococcus | 2.1367 |
| Rhodopirellula rubra | Rhodopirellula | 2.1031 |
| Bacteroides fragilis | Bacteroides | 2.0386 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 1.8843 |
| Megamonas hypermegale | Megamonas | 1.8689 |
| Hominimerdicola aceti | Hominimerdicola | 1.6817 |
| Subdoligranulum variabile | Subdoligranulum | 1.5155 |
| Roseburia inulinivorans | Roseburia | 0.9651 |
| Prevotella nigrescens | Prevotella | 0.9344 |
| Ruminococcus callidus | Ruminococcus | 0.9062 |
| Gemmiger formicilis | Gemmiger | 0.8436 |
| Prevotella jejuni | Prevotella | 0.6898 |
| Anaerostipes butyraticus | Anaerostipes | 0.6534 |
| Dorea formicigenerans | Dorea | 0.6035 |
| Dorea longicatena | Dorea | 0.5858 |
| Coprococcus eutactus | Coprococcus | 0.5761 |
| Blautia hansenii | Blautia | 0.5254 |
| Phocaeicola vulgatus | Phocaeicola | 0.4916 |
| Lachnospira multipara | Lachnospira | 0.4493 |
| Blautia luti | Blautia | 0.3530 |
Saved public metadata
{
"run_accession": "ERR16795787",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950369",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "207748",
"base_count": "157606703",
"fastq_bytes": "139877733",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/087/ERR16795787/ERR16795787.fastq.gz",
"sample_title": "TBAGUMPS_009b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "fc8254e6b43a08cf97c8a56e463a1da14d81b4d6425df670aed4c4d711e75272",
"length_window_bp": [
1200,
2000
],
"median_read_length": 221.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12953,
"elapsed_seconds": 1.738943336000034,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 68,
"fraction": 0.34,
"adapters_found": {
"BC_FLANK": 19,
"RAP": 39,
"27F": 10
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}