ERR16795783 · Gut microbiome
TBAGUMPS_007b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 18.5562 |
| Blautia glucerasea | Blautia | 11.0288 |
| Anaerostipes hadrus | Anaerostipes | 9.7761 |
| Pedobacter kyungheensis | Pedobacter | 7.9958 |
| Lachnospira eligens | Lachnospira | 7.5571 |
| Blautia producta | Blautia | 6.9200 |
| Roseburia intestinalis | Roseburia | 6.1926 |
| Pedobacter hainanensis | Pedobacter | 4.8550 |
| Blautia faecis | Blautia | 3.2731 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.4973 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.2993 |
| Rhodopirellula rubra | Rhodopirellula | 2.2881 |
| Roseburia hominis | Roseburia | 2.2733 |
| Ruminococcus champanellensis | Ruminococcus | 2.1122 |
| Bacteroides fragilis | Bacteroides | 1.4256 |
| Phocaeicola vulgatus | Phocaeicola | 1.2948 |
| Blautia hansenii | Blautia | 1.2802 |
| Subdoligranulum variabile | Subdoligranulum | 1.1924 |
| Dorea formicigenerans | Dorea | 0.9322 |
| Pedobacter nototheniae | Pedobacter | 0.8022 |
| Gemmiger formicilis | Gemmiger | 0.7282 |
| Blautia luti | Blautia | 0.6617 |
| Anaerostipes butyraticus | Anaerostipes | 0.6306 |
| Pedobacter roseus | Pedobacter | 0.5358 |
| Ruminococcus callidus | Ruminococcus | 0.5234 |
| Coprococcus eutactus | Coprococcus | 0.5015 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.4316 |
| Prevotella copri | Prevotella | 0.4143 |
| Dorea longicatena | Dorea | 0.4142 |
| Blautia marasmi | Blautia | 0.2699 |
| Romboutsia timonensis | Romboutsia | 0.2158 |
| Prevotella nigrescens | Prevotella | 0.1208 |
Saved public metadata
{
"run_accession": "ERR16795783",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950365",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "127540",
"base_count": "125696547",
"fastq_bytes": "108225133",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/083/ERR16795783/ERR16795783.fastq.gz",
"sample_title": "TBAGUMPS_007b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e4669b7df52ad1288c67c86ea393ed352994ff2a46e88d38eda1f394afd2da03",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1478.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 8277,
"elapsed_seconds": 1.6885804439999674,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 72,
"fraction": 0.36,
"adapters_found": {
"RAP": 39,
"BC_FLANK": 28,
"27F": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}