ERR16795777 · Gut microbiome
SedC08b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 29.9564 |
| Lachnospira eligens | Lachnospira | 18.3567 |
| Roseburia hominis | Roseburia | 11.7821 |
| Blautia glucerasea | Blautia | 7.8626 |
| Anaerostipes hadrus | Anaerostipes | 6.5078 |
| Blautia producta | Blautia | 6.3631 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 3.3226 |
| Roseburia intestinalis | Roseburia | 3.0718 |
| Phocaeicola dorei | Phocaeicola | 1.4714 |
| Anaplasma marginale | Anaplasma | 0.8521 |
| Blautia hansenii | Blautia | 0.7413 |
| Akkermansia muciniphila | Akkermansia | 0.7334 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6923 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.6847 |
| Dorea formicigenerans | Dorea | 0.5384 |
| Bacteroides fragilis | Bacteroides | 0.5199 |
| Anaplasma phagocytophilum | Anaplasma | 0.5148 |
| Gemmiger formicilis | Gemmiger | 0.5070 |
| Subdoligranulum variabile | Subdoligranulum | 0.4766 |
| Lachnospira multipara | Lachnospira | 0.4436 |
| Bacteroides uniformis | Bacteroides | 0.4317 |
| Roseburia inulinivorans | Roseburia | 0.4164 |
| Phocaeicola vulgatus | Phocaeicola | 0.3992 |
| Blautia faecis | Blautia | 0.3899 |
| Roseburia faecis | Roseburia | 0.3367 |
| Anaerotignum faecicola | Anaerotignum | 0.3342 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.3156 |
| Anaplasma centrale | Anaplasma | 0.2855 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.2785 |
| Anaerostipes butyraticus | Anaerostipes | 0.2063 |
| Alistipes onderdonkii | Alistipes | 0.1949 |
| Blautia marasmi | Blautia | 0.1812 |
| Coprococcus eutactus | Coprococcus | 0.1625 |
| Lachnospira pectinoschiza | Lachnospira | 0.1350 |
| Blautia luti | Blautia | 0.1161 |
| Streptococcus salivarius | Streptococcus | 0.1145 |
| Blautia wexlerae | Blautia | 0.1068 |
| Parabacteroides merdae | Parabacteroides | 0.0882 |
| Streptococcus equinus | Streptococcus | 0.0573 |
| Flavonifractor plautii | Flavonifractor | 0.0511 |
Saved public metadata
{
"run_accession": "ERR16795777",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950359",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "127235",
"base_count": "188130729",
"fastq_bytes": "157771407",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/077/ERR16795777/ERR16795777.fastq.gz",
"sample_title": "SedC08b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "360fe33bc665a3b008757f694f9a5791a0f7c2e7d205bd50ca9c952622d70f19",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 8267,
"elapsed_seconds": 2.577410527999973,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 13,
"fraction": 0.065,
"adapters_found": {
"BC_FLANK": 9,
"27F": 4
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}