ERR16795775 · Gut microbiome

SedC05b_16s

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Mediterraneibacter glycyrrhizinilyticus	Mediterraneibacter	16.8456
Blautia glucerasea	Blautia	16.6079
Dorea formicigenerans	Dorea	12.7879
Faecalibacterium prausnitzii	Faecalibacterium	7.8208
Streptococcus thermophilus	Streptococcus	6.7267
Blautia producta	Blautia	6.6782
Anaerostipes hadrus	Anaerostipes	5.3556
Catenibacterium mitsuokai	Catenibacterium	4.5341
Anaerobutyricum hallii	Anaerobutyricum	3.5030
Prevotella copri	Prevotella	2.4291
Dorea longicatena	Dorea	2.3273
Ruminococcus callidus	Ruminococcus	2.1766
Ruminococcus champanellensis	Ruminococcus	2.0140
Blautia faecis	Blautia	1.4554
Streptococcus salivarius	Streptococcus	1.3418
Blautia hansenii	Blautia	1.1069
Subdoligranulum variabile	Subdoligranulum	0.5190
Anaerostipes butyraticus	Anaerostipes	0.4338
Streptococcus parasanguinis	Streptococcus	0.3701
Blautia obeum	Blautia	0.3621
Prevotella jejuni	Prevotella	0.3593
Bacteroides fragilis	Bacteroides	0.3210
Dialister hominis	Dialister	0.3046
Ruminococcus bromii	Ruminococcus	0.2855
Lactiplantibacillus plantarum	Lactiplantibacillus	0.2734
Prevotella nigrescens	Prevotella	0.2656
Ruminococcus flavefaciens	Ruminococcus	0.2599
Phocaeicola vulgatus	Phocaeicola	0.2499
Gemmiger formicilis	Gemmiger	0.2442
Phocaeicola plebeius	Phocaeicola	0.2304
Bacteroides graminisolvens	Bacteroides	0.2219
Prevotella stercorea	Prevotella	0.2031
Blautia wexlerae	Blautia	0.1881
Streptococcus viridans	Streptococcus	0.1757
Blautia luti	Blautia	0.1677
Streptococcus sanguinis	Streptococcus	0.1530
Streptococcus vestibularis	Streptococcus	0.1408
Phocaeicola dorei	Phocaeicola	0.1172
Romboutsia timonensis	Romboutsia	0.1093
Ruminococcus gauvreauii	Ruminococcus	0.1018
Anaerostipes rhamnosivorans	Anaerostipes	0.0797
Limosilactobacillus fermentum	Limosilactobacillus	0.0586
Lactobacillus crispatus	Lactobacillus	0.0469
Ralstonia pickettii	Ralstonia	0.0469

Saved public metadata

{
  "run_accession": "ERR16795775",
  "study_accession": "PRJEB109268",
  "sample_accession": "SAMEA121950357",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "PCR",
  "read_count": "106571",
  "base_count": "158057196",
  "fastq_bytes": "114376237",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/075/ERR16795775/ERR16795775.fastq.gz",
  "sample_title": "SedC05b_16s",
  "scientific_name": "gut metagenome"
}

Public files

ERR16795775.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "9881e1b48e4becf94e0ce1e9ad0a7ae3850077f6e626981b13e2c61ded2b8fa8",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1492.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 30000,
    "reads_skipped": 4182,
    "elapsed_seconds": 3.0326482730000066,
    "reads_submitted": 30000,
    "reads_after_filter": 30000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 39,
      "fraction": 0.195,
      "adapters_found": {
        "BC_FLANK": 33,
        "RAP": 1,
        "27F": 5
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}