ERR16795774 · Gut microbiome
SedC04b_16s
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 24.0129 |
| Blautia glucerasea | Blautia | 19.4156 |
| Blautia producta | Blautia | 13.8831 |
| Dorea formicigenerans | Dorea | 6.0003 |
| Streptococcus thermophilus | Streptococcus | 5.6365 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.1069 |
| Blautia faecis | Blautia | 3.0646 |
| Eubacterium oxidoreducens | Eubacterium | 2.4085 |
| Anaerostipes hadrus | Anaerostipes | 2.2457 |
| Dorea longicatena | Dorea | 2.2212 |
| Gemmiger formicilis | Gemmiger | 2.0714 |
| Blautia hansenii | Blautia | 1.7184 |
| Ruminococcus champanellensis | Ruminococcus | 1.3412 |
| Ruminococcus callidus | Ruminococcus | 1.1998 |
| Subdoligranulum variabile | Subdoligranulum | 1.0142 |
| Romboutsia timonensis | Romboutsia | 0.9234 |
| Hominimerdicola aceti | Hominimerdicola | 0.8451 |
| Eubacterium limosum | Eubacterium | 0.8114 |
| Streptococcus salivarius | Streptococcus | 0.7393 |
| Escherichia coli | Escherichia | 0.6371 |
| Klebsiella pneumoniae | Klebsiella | 0.5981 |
| Eubacterium ventriosum | Eubacterium | 0.5635 |
| Blautia wexlerae | Blautia | 0.5396 |
| Blautia luti | Blautia | 0.5358 |
| Floricoccus penangensis | Floricoccus | 0.5100 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.4795 |
| Floricoccus tropicus | Floricoccus | 0.4415 |
| Eubacterium ruminantium | Eubacterium | 0.3468 |
| Allocoprococcus comes | Allocoprococcus | 0.3319 |
| Blautia obeum | Blautia | 0.2757 |
| Bifidobacterium longum | Bifidobacterium | 0.2746 |
| Streptococcus koreensis | Streptococcus | 0.2627 |
| Collinsella aerofaciens | Collinsella | 0.2210 |
| Anaerostipes butyraticus | Anaerostipes | 0.1961 |
| Ruminococcus bromii | Ruminococcus | 0.1722 |
| Eubacterium uniforme | Eubacterium | 0.1695 |
| Streptococcus parasanguinis | Streptococcus | 0.1616 |
| Roseateles chitosanitabidus | Roseateles | 0.1374 |
| Eubacterium maltosivorans | Eubacterium | 0.1339 |
| Ruminococcus flavefaciens | Ruminococcus | 0.1306 |
| Roseateles depolymerans | Roseateles | 0.1226 |
| Blautia marasmi | Blautia | 0.0987 |
Saved public metadata
{
"run_accession": "ERR16795774",
"study_accession": "PRJEB109268",
"sample_accession": "SAMEA121950356",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "115650",
"base_count": "171713165",
"fastq_bytes": "122439625",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR167/074/ERR16795774/ERR16795774.fastq.gz",
"sample_title": "SedC04b_16s",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9dd356cd3996f5d0f19626c6309a009ea82c2d20f9e4081a6760ccca88d927ce",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1492.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 6799,
"elapsed_seconds": 2.739780259999975,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 36,
"fraction": 0.18,
"adapters_found": {
"BC_FLANK": 30,
"27F": 6
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}