ERR14843209 · Gut microbiome
RAT_5
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 65.3542 |
| Limosilactobacillus reuteri | Limosilactobacillus | 6.0763 |
| Muribaculum intestinale | Muribaculum | 5.7896 |
| Ligilactobacillus murinus | Ligilactobacillus | 4.8369 |
| Akkermansia muciniphila | Akkermansia | 2.6294 |
| Jeotgalicoccus huakuii | Jeotgalicoccus | 2.4214 |
| Lactobacillus psittaci | Lactobacillus | 1.6528 |
| Sporosarcina pasteurii | Sporosarcina | 1.2484 |
| Staphylococcus nepalensis | Staphylococcus | 1.0141 |
| Ligilactobacillus salivarius | Ligilactobacillus | 0.9928 |
| Lactobacillus gasseri | Lactobacillus | 0.9230 |
| Lactobacillus taiwanensis | Lactobacillus | 0.8953 |
| Odoribacter laneus | Odoribacter | 0.6121 |
| Odoribacter splanchnicus | Odoribacter | 0.5610 |
| Staphylococcus stepanovicii | Staphylococcus | 0.4331 |
| Alistipes dispar | Alistipes | 0.3861 |
| Jeotgalicoccus aerolatus | Jeotgalicoccus | 0.3154 |
| Alistipes onderdonkii | Alistipes | 0.2764 |
| Staphylococcus saprophyticus | Staphylococcus | 0.2693 |
| Dyadobacter jejuensis | Dyadobacter | 0.2529 |
| Lactobacillus delbrueckii | Lactobacillus | 0.2477 |
| Dyadobacter tibetensis | Dyadobacter | 0.2467 |
| Jeotgalicoccus coquinae | Jeotgalicoccus | 0.2310 |
| Floricoccus tropicus | Floricoccus | 0.2120 |
| Staphylococcus vitulinus | Staphylococcus | 0.2084 |
| Staphylococcus sciuri | Staphylococcus | 0.2068 |
| Lactobacillus hominis | Lactobacillus | 0.1934 |
| Staphylococcus aureus | Staphylococcus | 0.1919 |
| Lactobacillus acetotolerans | Lactobacillus | 0.1837 |
| Akkermansia glycaniphila | Akkermansia | 0.1736 |
| Rhodopirellula rubra | Rhodopirellula | 0.1662 |
| Alistipes inops | Alistipes | 0.1602 |
| Alistipes finegoldii | Alistipes | 0.1512 |
| Alistipes putredinis | Alistipes | 0.1332 |
| Jeotgalicoccus halotolerans | Jeotgalicoccus | 0.1272 |
| Staphylococcus pseudintermedius | Staphylococcus | 0.1197 |
| Staphylococcus cohnii | Staphylococcus | 0.1066 |
Saved public metadata
{
"run_accession": "ERR14843209",
"study_accession": "PRJEB88391",
"sample_accession": "SAMEA117993194",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "149369",
"base_count": "217532632",
"fastq_bytes": "174532932",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/009/ERR14843209/ERR14843209.fastq.gz",
"sample_title": "RAT_5",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "080b8a36e24bca88b1776c35035585d5820dd65f27c14ccb9e3d043f2ebfc22b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1533.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 8658,
"elapsed_seconds": 3.1854998379999984,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 37,
"fraction": 0.185,
"adapters_found": {
"BC_FLANK": 27,
"RAP": 8,
"27F": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}