ERR14843199 · Gut microbiome
RAT_10
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 54.1956 |
| Limosilactobacillus reuteri | Limosilactobacillus | 25.1235 |
| Ligilactobacillus murinus | Ligilactobacillus | 5.0726 |
| Muribaculum intestinale | Muribaculum | 2.4839 |
| Lactobacillus psittaci | Lactobacillus | 1.4557 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.0765 |
| Alistipes dispar | Alistipes | 1.0594 |
| Lactobacillus gasseri | Lactobacillus | 0.8456 |
| Odoribacter laneus | Odoribacter | 0.7979 |
| Bacteroides rodentium | Bacteroides | 0.7875 |
| Lactobacillus taiwanensis | Lactobacillus | 0.7152 |
| Alistipes onderdonkii | Alistipes | 0.6879 |
| Odoribacter splanchnicus | Odoribacter | 0.5799 |
| Anaerococcus mediterraneensis | Anaerococcus | 0.4769 |
| Bacteroides uniformis | Bacteroides | 0.4409 |
| Alistipes putredinis | Alistipes | 0.4276 |
| Bacteroides helcogenes | Bacteroides | 0.4051 |
| Bacteroides fragilis | Bacteroides | 0.4019 |
| Bacteroides caecicola | Bacteroides | 0.2915 |
| Limosilactobacillus oris | Limosilactobacillus | 0.2861 |
| Rhodopirellula rubra | Rhodopirellula | 0.2439 |
| Alistipes inops | Alistipes | 0.2347 |
| Anaerococcus rubeinfantis | Anaerococcus | 0.2272 |
| Bacteroides stercoris | Bacteroides | 0.1877 |
| Alistipes megaguti | Alistipes | 0.1825 |
| Bacteroides caecimuris | Bacteroides | 0.1747 |
| Lactobacillus acetotolerans | Lactobacillus | 0.1612 |
| Bacteroides acidifaciens | Bacteroides | 0.1565 |
| Lactobacillus hominis | Lactobacillus | 0.1480 |
| Bacteroides intestinalis | Bacteroides | 0.1473 |
| Lactobacillus delbrueckii | Lactobacillus | 0.1453 |
| Marvinbryantia formatexigens | Marvinbryantia | 0.1391 |
| Bacteroides timonensis | Bacteroides | 0.1339 |
| Alistipes finegoldii | Alistipes | 0.1068 |
Saved public metadata
{
"run_accession": "ERR14843199",
"study_accession": "PRJEB88391",
"sample_accession": "SAMEA117993184",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "230672",
"base_count": "345674690",
"fastq_bytes": "274949888",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/099/ERR14843199/ERR14843199.fastq.gz",
"sample_title": "RAT_10",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d068c8575562942022689c4667c1d47a32d1642c18b2dd93ece7cce03ddb94c6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1535.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 6909,
"elapsed_seconds": 2.8231261990000007,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 52,
"fraction": 0.26,
"adapters_found": {
"BC_FLANK": 43,
"RAP": 4,
"27F": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}