ERR14843191 · Gut microbiome
RAT_22
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 46.7885 |
| Limosilactobacillus reuteri | Limosilactobacillus | 29.0791 |
| Ligilactobacillus murinus | Ligilactobacillus | 7.1023 |
| Muribaculum intestinale | Muribaculum | 3.9175 |
| Anaerococcus mediterraneensis | Anaerococcus | 2.0401 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.6153 |
| Lactobacillus psittaci | Lactobacillus | 1.2285 |
| Lactobacillus gasseri | Lactobacillus | 0.9751 |
| Anaerococcus rubeinfantis | Anaerococcus | 0.7747 |
| Bacteroides fragilis | Bacteroides | 0.5277 |
| Alistipes dispar | Alistipes | 0.5140 |
| Lactobacillus taiwanensis | Lactobacillus | 0.4836 |
| Anaerococcus pacaensis | Anaerococcus | 0.4346 |
| Rhodopirellula rubra | Rhodopirellula | 0.4310 |
| Anaerococcus prevotii | Anaerococcus | 0.4163 |
| Limosilactobacillus oris | Limosilactobacillus | 0.3700 |
| Bacteroides helcogenes | Bacteroides | 0.3322 |
| Bacteroides caecicola | Bacteroides | 0.3032 |
| Bacteroides rodentium | Bacteroides | 0.2991 |
| Alistipes putredinis | Alistipes | 0.2908 |
| Bacteroides acidifaciens | Bacteroides | 0.2876 |
| Alistipes onderdonkii | Alistipes | 0.2649 |
| Bacteroides uniformis | Bacteroides | 0.2433 |
| Alistipes inops | Alistipes | 0.1964 |
| Lactobacillus acetotolerans | Lactobacillus | 0.1797 |
| Dyadobacter tibetensis | Dyadobacter | 0.1783 |
| Dyadobacter jejuensis | Dyadobacter | 0.1709 |
| Lactobacillus delbrueckii | Lactobacillus | 0.1366 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.1190 |
| Alistipes megaguti | Alistipes | 0.1129 |
| Anaerococcus jeddahensis | Anaerococcus | 0.1020 |
| Anaerococcus urinomassiliensis | Anaerococcus | 0.0852 |
Saved public metadata
{
"run_accession": "ERR14843191",
"study_accession": "PRJEB88391",
"sample_accession": "SAMEA117993176",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "153708",
"base_count": "230536190",
"fastq_bytes": "181525270",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/091/ERR14843191/ERR14843191.fastq.gz",
"sample_title": "RAT_22",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b2247ca563be8f03108bc13804cdcbfdcd94f8804d09c6d51d7077333bd0cfd6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1535.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 5941,
"elapsed_seconds": 3.293860711999997,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 57,
"fraction": 0.285,
"adapters_found": {
"BC_FLANK": 43,
"RAP": 9,
"27F": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}