ERR14843190 · Gut microbiome
RAT_16
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 42.5214 |
| Limosilactobacillus reuteri | Limosilactobacillus | 15.2243 |
| Ligilactobacillus murinus | Ligilactobacillus | 11.0186 |
| Muribaculum intestinale | Muribaculum | 3.6071 |
| Mucispirillum schaedleri | Mucispirillum | 3.5949 |
| Intestinimonas butyriciproducens | Intestinimonas | 2.7103 |
| Ligilactobacillus salivarius | Ligilactobacillus | 2.4490 |
| Odoribacter laneus | Odoribacter | 2.1144 |
| Lactobacillus psittaci | Lactobacillus | 1.4857 |
| Bacteroides rodentium | Bacteroides | 1.2207 |
| Odoribacter splanchnicus | Odoribacter | 1.0829 |
| Alistipes dispar | Alistipes | 1.0540 |
| Marvinbryantia formatexigens | Marvinbryantia | 1.0312 |
| Adlercreutzia equolifaciens | Adlercreutzia | 0.9486 |
| Anaerococcus mediterraneensis | Anaerococcus | 0.8495 |
| Bacteroides uniformis | Bacteroides | 0.8280 |
| Lactobacillus gasseri | Lactobacillus | 0.6646 |
| Rhodopirellula rubra | Rhodopirellula | 0.6625 |
| Lactobacillus taiwanensis | Lactobacillus | 0.5612 |
| Alistipes putredinis | Alistipes | 0.4949 |
| Alistipes onderdonkii | Alistipes | 0.4849 |
| Neglectibacter timonensis | Neglectibacter | 0.4421 |
| Schaedlerella arabinosiphila | Schaedlerella | 0.3652 |
| Anaerococcus rubeinfantis | Anaerococcus | 0.3542 |
| Bacteroides fragilis | Bacteroides | 0.3350 |
| Alistipes megaguti | Alistipes | 0.3305 |
| Limosilactobacillus oris | Limosilactobacillus | 0.3139 |
| Adlercreutzia mucosicola | Adlercreutzia | 0.3008 |
| Bacteroides stercoris | Bacteroides | 0.2878 |
| Bacteroides timonensis | Bacteroides | 0.2760 |
| Bacteroides intestinalis | Bacteroides | 0.2625 |
| Bacteroides helcogenes | Bacteroides | 0.2606 |
| Bacteroides acidifaciens | Bacteroides | 0.2603 |
| Lactobacillus delbrueckii | Lactobacillus | 0.2568 |
| Alistipes inops | Alistipes | 0.2499 |
| Bacteroides caecimuris | Bacteroides | 0.2243 |
| Flintibacter butyricus | Flintibacter | 0.2179 |
| Lactobacillus rhamnosus | Lactobacillus | 0.1865 |
| Bacteroides caecicola | Bacteroides | 0.1585 |
| Anaerococcus prevotii | Anaerococcus | 0.1547 |
| Anaerococcus pacaensis | Anaerococcus | 0.1538 |
Saved public metadata
{
"run_accession": "ERR14843190",
"study_accession": "PRJEB88391",
"sample_accession": "SAMEA117993175",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "229526",
"base_count": "331051734",
"fastq_bytes": "283486699",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/090/ERR14843190/ERR14843190.fastq.gz",
"sample_title": "RAT_16",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3bd4729e407f849dad21c14fb18d3051ee06d5e63f6c64aa90d66ec4200761b6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1525.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 14235,
"elapsed_seconds": 2.5053564639999877,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 44,
"fraction": 0.22,
"adapters_found": {
"BC_FLANK": 26,
"RAP": 12,
"27F": 6
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}