ERR13464092 · Gut microbiome
GUTMCM_minion_v1_9_20240606_macherey_nagel_MN1_bc09
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 23.9059 |
| Escherichia coli | Escherichia | 22.7980 |
| Veillonella parvula | Veillonella | 16.0231 |
| Veillonella rodentium | Veillonella | 8.9939 |
| Clostridioides difficile | Clostridioides | 4.5884 |
| Veillonella dispar | Veillonella | 4.1540 |
| Bacteroides fragilis | Bacteroides | 2.1928 |
| Roseburia hominis | Roseburia | 2.1435 |
| Shigella dysenteriae | Shigella | 2.0768 |
| Veillonella seminalis | Veillonella | 1.8097 |
| Roseburia intestinalis | Roseburia | 1.4623 |
| Shigella sonnei | Shigella | 1.2185 |
| Fusobacterium nucleatum | Fusobacterium | 0.9912 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.9341 |
| Prevotella intermedia | Prevotella | 0.9332 |
| Escherichia fergusonii | Escherichia | 0.7208 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.6653 |
| Prevotella jejuni | Prevotella | 0.5094 |
| Fusobacterium periodonticum | Fusobacterium | 0.4743 |
| Veillonella infantium | Veillonella | 0.4177 |
| Veillonella rogosae | Veillonella | 0.3752 |
| Prevotella nigrescens | Prevotella | 0.3521 |
| Bacteroides timonensis | Bacteroides | 0.3484 |
| Shigella flexneri | Shigella | 0.2452 |
| Prevotella corporis | Prevotella | 0.2340 |
| Prevotella melaninogenica | Prevotella | 0.1914 |
| Bacteroides intestinalis | Bacteroides | 0.1613 |
| Bacteroides ovatus | Bacteroides | 0.1508 |
| Shigella boydii | Shigella | 0.1486 |
| Fusobacterium hwasookii | Fusobacterium | 0.1430 |
| Fusobacterium necrophorum | Fusobacterium | 0.1260 |
| Veillonella tobetsuensis | Veillonella | 0.1225 |
| Veillonella atypica | Veillonella | 0.1080 |
| Limosilactobacillus oris | Limosilactobacillus | 0.1039 |
| Bacteroides cellulosilyticus | Bacteroides | 0.0970 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.0796 |
Saved public metadata
{
"run_accession": "ERR13464092",
"study_accession": "PRJEB59610",
"sample_accession": "SAMEA115904664",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "1518867",
"base_count": "2341638082",
"fastq_bytes": "1934329568",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR134/092/ERR13464092/ERR13464092.fastq.gz",
"sample_title": "GUTMCM_minion_v1_9_20240606_macherey_nagel_MN1_bc09",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d15ab90c198fcb41f3410d961ed3b2416a1130e525296f5733231b6b36c01a7d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1583.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 2959,
"elapsed_seconds": 6.460923188999999,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 45,
"fraction": 0.225,
"adapters_found": {
"27F": 43,
"BC_FLANK": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}