ERR13464071 · Gut microbiome
GUTMCM_minion_v1_9_20240516_zymo_Z1_bc01
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 24.0561 |
| Veillonella parvula | Veillonella | 21.5134 |
| Escherichia coli | Escherichia | 13.0781 |
| Veillonella rodentium | Veillonella | 12.4936 |
| Clostridioides difficile | Clostridioides | 3.4372 |
| Veillonella dispar | Veillonella | 3.3729 |
| Fusobacterium nucleatum | Fusobacterium | 2.7031 |
| Roseburia intestinalis | Roseburia | 2.3002 |
| Roseburia hominis | Roseburia | 2.0154 |
| Veillonella seminalis | Veillonella | 1.6231 |
| Shigella dysenteriae | Shigella | 1.6193 |
| Bacteroides fragilis | Bacteroides | 1.3789 |
| Prevotella intermedia | Prevotella | 1.1997 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.1417 |
| Fusobacterium periodonticum | Fusobacterium | 1.0689 |
| Veillonella infantium | Veillonella | 1.0415 |
| Veillonella rogosae | Veillonella | 0.8111 |
| Shigella sonnei | Shigella | 0.6031 |
| Prevotella corporis | Prevotella | 0.5112 |
| Prevotella nigrescens | Prevotella | 0.3810 |
| Escherichia fergusonii | Escherichia | 0.3706 |
| Akkermansia muciniphila | Akkermansia | 0.3385 |
| Bacteroides timonensis | Bacteroides | 0.3300 |
| Fusobacterium simiae | Fusobacterium | 0.3104 |
| Shigella flexneri | Shigella | 0.3099 |
| Bacteroides ovatus | Bacteroides | 0.2922 |
| Veillonella tobetsuensis | Veillonella | 0.2664 |
| Fusobacterium hwasookii | Fusobacterium | 0.2622 |
| Veillonella atypica | Veillonella | 0.2113 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.1572 |
| Prevotella melaninogenica | Prevotella | 0.1518 |
| Prevotella jejuni | Prevotella | 0.1352 |
| Veillonella ratti | Veillonella | 0.1250 |
| Bacteroides cellulosilyticus | Bacteroides | 0.1157 |
| Roseburia faecis | Roseburia | 0.1088 |
| Fusobacterium necrophorum | Fusobacterium | 0.0837 |
| Veillonella caviae | Veillonella | 0.0819 |
Saved public metadata
{
"run_accession": "ERR13464071",
"study_accession": "PRJEB59610",
"sample_accession": "SAMEA115904655",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "468239",
"base_count": "720225551",
"fastq_bytes": "589801887",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR134/071/ERR13464071/ERR13464071.fastq.gz",
"sample_title": "GUTMCM_minion_v1_9_20240516_zymo_Z1_bc01",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "bafddbf94968cae77f739fbc9362f24611cdd7227e68e924b21cbefc4c8e1ec0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1575.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 5106,
"elapsed_seconds": 4.609243295999988,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}