ERR12253013 · Gut microbiome
Canfam_Bloff01_DMD_minion_v1_9_20221011_macherey_nagel_bc09
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Peptacetobacter hiranonis | Peptacetobacter | 47.7344 |
| Blautia producta | Blautia | 9.0230 |
| Megamonas hypermegale | Megamonas | 8.2340 |
| Faecalibacterium prausnitzii | Faecalibacterium | 5.9893 |
| Blautia faecis | Blautia | 5.2095 |
| Blautia hansenii | Blautia | 4.0886 |
| Lachnospira eligens | Lachnospira | 3.8065 |
| Megamonas funiformis | Megamonas | 2.9573 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.4715 |
| Peptoanaerobacter stomatis | Peptoanaerobacter | 1.4051 |
| Negativibacillus massiliensis | Negativibacillus | 1.3753 |
| Lachnospira pectinoschiza | Lachnospira | 0.6998 |
| Peptococcus niger | Peptococcus | 0.6225 |
| Blautia luti | Blautia | 0.5633 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.5497 |
| Prevotella jejuni | Prevotella | 0.5119 |
| Prevotella intermedia | Prevotella | 0.4980 |
| Blautia glucerasea | Blautia | 0.4365 |
| Fusobacterium nucleatum | Fusobacterium | 0.3961 |
| Floricoccus tropicus | Floricoccus | 0.3517 |
| Faecalimonas umbilicata | Faecalimonas | 0.3177 |
| Prevotella melaninogenica | Prevotella | 0.3158 |
| Prevotella nigrescens | Prevotella | 0.2991 |
| Fusobacterium periodonticum | Fusobacterium | 0.2832 |
| Fusobacterium necrophorum | Fusobacterium | 0.2817 |
| Fusobacterium varium | Fusobacterium | 0.2643 |
| Phocaeicola vulgatus | Phocaeicola | 0.2344 |
| Prevotella heparinolytica | Prevotella | 0.1807 |
| Phocaeicola dorei | Phocaeicola | 0.1736 |
| Collinsella aerofaciens | Collinsella | 0.1628 |
| Megamonas rupellensis | Megamonas | 0.1586 |
| Fusobacterium simiae | Fusobacterium | 0.0971 |
| Floricoccus penangensis | Floricoccus | 0.0918 |
| Faecalimonas nexilis | Faecalimonas | 0.0892 |
| Helicobacter hepaticus | Helicobacter | 0.0651 |
| Parabacteroides distasonis | Parabacteroides | 0.0610 |
Saved public metadata
{
"run_accession": "ERR12253013",
"study_accession": "PRJEB59610",
"sample_accession": "SAMEA114006755",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "241411",
"base_count": "375230194",
"fastq_bytes": "358521604",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/013/ERR12253013/ERR12253013.fastq.gz",
"sample_title": "Canfam_Bloff01_DMD_minion_v1_9_20221011_macherey_nagel_bc09",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9037fab23778d86f5cc65a3113cf77ca68cd69062a0efa2dc2fa2a0b0eccfa00",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1572.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 5337,
"elapsed_seconds": 2.392124543999998,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 19,
"fraction": 0.095,
"adapters_found": {
"27F": 19
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}