DRR258837 · Gut microbiome
Feces from healthy horse L
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Streptococcus equinus | Streptococcus | 24.1869 |
| Streptococcus salivarius | Streptococcus | 16.6964 |
| Ruminococcus champanellensis | Ruminococcus | 10.2815 |
| Streptococcus mitis | Streptococcus | 4.9345 |
| Streptococcus downei | Streptococcus | 4.3839 |
| Blautia producta | Blautia | 4.1926 |
| Sarcina maxima | Sarcina | 3.7193 |
| Ligilactobacillus agilis | Ligilactobacillus | 3.0901 |
| Streptococcus lutetiensis | Streptococcus | 2.3811 |
| Blautia hansenii | Blautia | 2.1659 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.8897 |
| Saccharofermentans acetigenes | Saccharofermentans | 1.8296 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.7586 |
| Streptococcus pyogenes | Streptococcus | 1.5182 |
| Treponema bryantii | Treponema | 1.4398 |
| Blautia glucerasea | Blautia | 1.4198 |
| Streptococcus infantarius | Streptococcus | 1.3683 |
| Pseudobutyrivibrio xylanivorans | Pseudobutyrivibrio | 1.3497 |
| Mogibacterium diversum | Mogibacterium | 1.1134 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.0009 |
| Blautia luti | Blautia | 0.9665 |
| Blautia schinkii | Blautia | 0.9122 |
| Mogibacterium timidum | Mogibacterium | 0.8413 |
| Treponema brennaborense | Treponema | 0.7797 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.7791 |
| Adlercreutzia equolifaciens | Adlercreutzia | 0.5999 |
| Streptococcus gallolyticus | Streptococcus | 0.5781 |
| Mogibacterium pumilum | Mogibacterium | 0.5498 |
| Ruminococcus bromii | Ruminococcus | 0.5158 |
| Ruminococcus callidus | Ruminococcus | 0.4954 |
| Streptococcus anginosus | Streptococcus | 0.4561 |
| Streptococcus suis | Streptococcus | 0.4516 |
| Streptococcus agalactiae | Streptococcus | 0.4235 |
| Weissella confusa | Weissella | 0.3749 |
| Blautia obeum | Blautia | 0.3460 |
| Terrisporobacter mayombei | Terrisporobacter | 0.2100 |
Saved public metadata
{
"run_accession": "DRR258837",
"study_accession": "PRJDB10841",
"sample_accession": "SAMD00260424",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "64768",
"base_count": "91597503",
"fastq_bytes": "88932933",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/DRR258/DRR258837/DRR258837_1.fastq.gz",
"sample_title": "Feces from healthy horse L",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "89cf8dd72cae8507e2e0adb98ee82f416b32cd4b35b619ccf18da91241bfb1c0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1470.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 23222,
"elapsed_seconds": 1.9969107780000002,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 5,
"fraction": 0.025,
"adapters_found": {
"RAP": 1,
"27F": 4
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}