DRR258831 · Gut microbiome
Feces from healthy horse A
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Treponema bryantii | Treponema | 16.2732 |
| Streptococcus equinus | Streptococcus | 10.1175 |
| Ruminococcus champanellensis | Ruminococcus | 8.5964 |
| Ligilactobacillus agilis | Ligilactobacillus | 7.4891 |
| Akkermansia muciniphila | Akkermansia | 6.3589 |
| Streptococcus salivarius | Streptococcus | 5.8862 |
| Gabonibacter massiliensis | Gabonibacter | 5.5725 |
| Treponema brennaborense | Treponema | 5.2232 |
| Sarcina maxima | Sarcina | 2.8718 |
| Akkermansia glycaniphila | Akkermansia | 2.7701 |
| Fibrobacter succinogenes | Fibrobacter | 2.5105 |
| Treponema succinifaciens | Treponema | 2.3514 |
| Ligilactobacillus salivarius | Ligilactobacillus | 2.3056 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.2718 |
| Kiritimatiella glycovorans | Kiritimatiella | 2.1871 |
| Streptococcus mitis | Streptococcus | 2.1689 |
| Streptococcus downei | Streptococcus | 1.5495 |
| Pseudobutyrivibrio xylanivorans | Pseudobutyrivibrio | 1.5405 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 1.5265 |
| Treponema pectinovorum | Treponema | 1.5230 |
| Adlercreutzia equolifaciens | Adlercreutzia | 1.3123 |
| Terrisporobacter mayombei | Terrisporobacter | 1.2362 |
| Streptococcus lutetiensis | Streptococcus | 1.1913 |
| Cellulosilyticum ruminicola | Cellulosilyticum | 0.8889 |
| Saccharofermentans acetigenes | Saccharofermentans | 0.8178 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.7522 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.7417 |
| Streptococcus pyogenes | Streptococcus | 0.6463 |
| Solibacillus silvestris | Solibacillus | 0.5896 |
| Streptococcus infantarius | Streptococcus | 0.4068 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.3233 |
Saved public metadata
{
"run_accession": "DRR258831",
"study_accession": "PRJDB10841",
"sample_accession": "SAMD00260422",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "74015",
"base_count": "104882087",
"fastq_bytes": "103520805",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/DRR258/DRR258831/DRR258831_1.fastq.gz",
"sample_title": "Feces from healthy horse A",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b6d495f56b1d0ae93f3e103350175b130c89cf40e04b01b68c2549fff9ae584e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1469.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 30000,
"reads_skipped": 24649,
"elapsed_seconds": 2.671942619,
"reads_submitted": 30000,
"reads_after_filter": 30000,
"adapter_scan": {
"sampled": 200,
"matched": 8,
"fraction": 0.04,
"adapters_found": {
"27F": 7,
"RAP": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}